# HG changeset patch
# User Daniel Blankenberg <dan@bx.psu.edu>
# Date 1347469611 14400
# Node ID 28e422c589ac11151b2af386a510a9c4d86a728b
# Parent  d3bf1e86b24334298ee47bb2cfc6ce472a869a2a
Fix for FreeBayes tool dependency git checkout commands. Credit goes to Lance Parsons.

diff -r d3bf1e86b243 -r 28e422c589ac tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Aug 29 11:46:04 2012 -0400
+++ b/tool_dependencies.xml	Wed Sep 12 13:06:51 2012 -0400
@@ -4,7 +4,8 @@
         <install version="1.0">
             <actions>
                 <action type="shell_command">git clone --recursive git://github.com/ekg/freebayes.git</action>
-                <action type="shell_command">git reset --hard 9608597d12e127c847ae03aa03440ab63992fedf</action>
+                <action type="shell_command">git checkout 9608597d12e127c847ae03aa03440ab63992fedf</action>
+                <action type="shell_command">git submodule update --recursive</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">
                     <source_directory>bin</source_directory>