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view ncbi_blast_plus/test-data/blastp_four_human_vs_rhodopsin_converted.tabular @ 1:27d7e1deada4 draft

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Uploaded v0.0.12 of the NCBI BLAST+ wrappers. Implements genetic code option for translation searches. Changes <parallelism> to 1000 sequences at a time (to cope with very large sets of queries where BLAST+ can become memory hungry). Include warning that BLAST+ with subject FASTA gives pairwise e-values.
author peterjc
date Thu, 23 Aug 2012 07:24:38 -0400
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sp|P08100|OPSD_HUMAN	gi|57163783|ref|NP_001009242.1|	96.55	348	12	0	1	348	1	348	0.0	701
sp|P08100|OPSD_HUMAN	gi|3024260|sp|P56514.1|OPSD_BUFBU	84.80	342	51	1	1	341	1	342	0.0	619
sp|P08100|OPSD_HUMAN	gi|283855846|gb|ADB45242.1|	94.82	328	17	0	11	338	1	328	0.0	653
sp|P08100|OPSD_HUMAN	gi|283855823|gb|ADB45229.1|	94.82	328	17	0	11	338	1	328	0.0	631
sp|P08100|OPSD_HUMAN	gi|223523|prf||0811197A	93.10	348	23	1	1	348	1	347	0.0	673
sp|P08100|OPSD_HUMAN	gi|12583665|dbj|BAB21486.1|	82.16	342	60	1	1	341	1	342	3e-176	599