Mercurial > repos > devteam > ncbi_blast_plus
view ncbi_blast_plus/tool_dependencies.xml @ 1:27d7e1deada4 draft
Uploaded v0.0.12 of the NCBI BLAST+ wrappers.
Implements genetic code option for translation searches.
Changes <parallelism> to 1000 sequences at a time (to cope with
very large sets of queries where BLAST+ can become memory hungry).
Include warning that BLAST+ with subject FASTA gives pairwise e-values.
author | peterjc |
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date | Thu, 23 Aug 2012 07:24:38 -0400 |
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<?xml version="1.0"?> <tool_dependency> <package name="blast+" version="2.2.26+"> <install version="1.0"> <actions> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> These links provide information for building the NCBI Blast+ package in most environments. System requirements http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download </readme> </package> </tool_dependency>