Mercurial > repos > devteam > picard

comparison picard_macros.xml @ 20:2a17c789e0a5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author iuc
date Tue, 19 Jun 2018 11:28:49 -0400
parents 5053a18d9bc8
children 6f9c0884a3e7
comparison
equal deleted inserted replaced
19:5053a18d9bc8 20:2a17c789e0a5
1 <macros> 1 <macros>
2 <token name="@TMPDIR_OPTION@">
3 `if [ -n "\$TMPDIR" ] ; then echo 'TMP_DIR=\$TMPDIR' ; else if [ -n "\$TEMP" ] ; then echo 'TMP_DIR=\$TEMP' ; fi ; fi`</token>
2 <xml name="VS"> 4 <xml name="VS">
3 <param name="validation_stringency" type="select" label="Select validation stringency" help=" Setting stringency to SILENT can improve performance when processing a BAM file in which variable-length data (read, qualities, tags) do not otherwise need to be decoded."> 5 <param name="validation_stringency" type="select" label="Select validation stringency" help=" Setting stringency to SILENT can improve performance when processing a BAM file in which variable-length data (read, qualities, tags) do not otherwise need to be decoded.">
4 <option value="LENIENT" selected="True">Lenient</option> 6 <option value="LENIENT" selected="True">Lenient</option>
5 <option value="SILENT">Silent</option> 7 <option value="SILENT">Silent</option>
6 <option value="STRICT">Strict</option> 8 <option value="STRICT">Strict</option>