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comparison picard_FilterSamReads.xml @ 14:465cbb0cf2eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:30 -0500
parents 7e6fd3d0f16e
children 5053a18d9bc8
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13:7e6fd3d0f16e 14:465cbb0cf2eb
9 @symlink_element_identifier@ 9 @symlink_element_identifier@
10 ##Sam Sorting is performed here because FilterSamReads requires input to be in query-sorted order 10 ##Sam Sorting is performed here because FilterSamReads requires input to be in query-sorted order
11 11
12 picard 12 picard
13 SortSam 13 SortSam
14 INPUT='$inputFile.element_identifier' 14 INPUT='$escaped_element_identifier'
15 OUTPUT=query_sorted_bam.bam 15 OUTPUT=query_sorted_bam.bam
16 SORT_ORDER=queryname 16 SORT_ORDER=queryname
17 VALIDATION_STRINGENCY=LENIENT 17 VALIDATION_STRINGENCY=LENIENT
18 QUIET=true 18 QUIET=true
19 VERBOSITY=ERROR 19 VERBOSITY=ERROR