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comparison picard_BedToIntervalList.xml @ 32:f9242e01365a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
author iuc
date Mon, 25 Sep 2023 08:32:17 +0000
parents 2a17c789e0a5
children 3f254c5ced1d
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31:585027e65f3b 32:f9242e01365a
16 #if str( $reference_source.reference_source_selector ) == "history": 16 #if str( $reference_source.reference_source_selector ) == "history":
17 17
18 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" 18 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}"
19 QUIET=true 19 QUIET=true
20 VERBOSITY=ERROR 20 VERBOSITY=ERROR
21 @TMPDIR_OPTION@
22 21
23 && 22 &&
24 23
25 #else: 24 #else:
26 25
35 OUTPUT="${outFile}" 34 OUTPUT="${outFile}"
36 35
37 SEQUENCE_DICTIONARY="${picard_dict}" 36 SEQUENCE_DICTIONARY="${picard_dict}"
38 QUIET=true 37 QUIET=true
39 VERBOSITY=ERROR 38 VERBOSITY=ERROR
40 @TMPDIR_OPTION@
41 39
42 ]]></command> 40 ]]></command>
43 41
44 <inputs> 42 <inputs>
45 43