diff picard_MergeBamAlignment.xml @ 31:585027e65f3b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 70d2a66c405be58d4413753792bcadf212a4da84

--- a/picard_MergeBamAlignment.xml	Mon Aug 22 09:56:00 2022 +0000
+++ b/picard_MergeBamAlignment.xml	Sat Feb 25 20:33:49 2023 +0000
@@ -2,7 +2,7 @@
   <description>merge alignment data with additional info stored in an unmapped BAM dataset</description>
   <macros>
     <import>picard_macros.xml</import>
-    <token name="@WRAPPER_VERSION@">1</token>
+    <token name="@WRAPPER_VERSION@">2</token>
   </macros>
   <expand macro="requirements" />
   <command detect_errors="exit_code"><![CDATA[
@@ -176,7 +176,7 @@
     <expand macro="VS" />
   </inputs>
   <outputs>
-    <data name="outFile" format="bam" label="${tool.name} on ${on_string}: BAM with merged alignments"/>
+    <data name="outFile" format="bam" label="${tool.name} on ${on_string}: BAM"/>
   </outputs>
   <tests>
     <test>
@@ -191,7 +191,7 @@
       <param name="max_insertions_or_deletions" value="1"/>
       <param name="read1_trim" value="0"/>
       <param name="read2_trim" value="0"/>
-      <param name="orientation" value="FR"/>
+      <param name="orientations" value="FR"/>
       <param name="aligner_proper_pair_flags" value="False"/>
       <param name="primary_alignment_strategy" value="BestMapq"/>
       <param name="clip_overlapping_reads" value="True"/>