Mercurial > repos > devteam > picard
view test-data/picard_CollectBaseDistributionByCycle_test1.tab @ 19:5053a18d9bc8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
| author | iuc |
|---|---|
| date | Mon, 16 Apr 2018 21:27:29 -0400 |
| parents | 3d4f1fa26f0e |
| children | 3f254c5ced1d |
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## htsjdk.samtools.metrics.StringHeader # CollectBaseDistributionByCycle CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_16.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=picard_CollectBaseDistributionByCycle_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_15.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat Apr 14 09:27:50 CEST 2018 ## METRICS CLASS picard.analysis.BaseDistributionByCycleMetrics READ_END CYCLE PCT_A PCT_C PCT_G PCT_T PCT_N 1 1 21 22 29 28 0 1 2 49 13 12 26 0 1 3 35 22 13 30 0 1 4 28 20 13 39 0 1 5 37 20 10 33 0 1 6 22 29 13 36 0 1 7 34 16 25 25 0 1 8 33 19 15 33 0 1 9 25 28 27 20 0 1 10 30 22 14 34 0 1 11 29 26 18 27 0 1 12 28 34 12 26 0 1 13 39 25 7 29 0 1 14 23 20 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1 219 32 24 14 30 0 1 220 19 29 17 35 0 1 221 24 37 14 25 0 1 222 24 28 20 28 0 1 223 25 26 23 26 0 1 224 30 37 15 18 0 1 225 19 39 16 26 0 1 226 24 33 16 27 0 1 227 28 35 10 27 0 1 228 25 29 18 28 0 1 229 29 17 17 37 0 1 230 34 18 22 26 0 1 231 22 33 18 27 0 1 232 30 21 18 31 0 1 233 23 34 12 31 0 1 234 29 28 16 27 0 1 235 23 28 19 30 0 1 236 27 30 17 26 0 1 237 30 26 16 28 0 1 238 21 16 26 37 0 1 239 35 20 10 35 0 1 240 27 22 22 29 0 1 241 24 28 15 33 0 1 242 28 21 18 33 0 1 243 17 22 26 35 0 1 244 27 22 20 31 0 1 245 40 24 11 25 0 1 246 22 34 22 22 0 1 247 29 25 16 30 0 1 248 28 19 18 35 0 1 249 31 27 15 27 0 1 250 29 23 17 31 0 1 251 22 25 24 29 0 2 252 20.20202 25.252525 38.383838 14.141414 2.020202 2 253 45.454545 14.141414 12.121212 28.282828 0 2 254 29.292929 25.252525 8.080808 37.373737 0 2 255 29.292929 30.30303 11.111111 29.292929 0 2 256 36.363636 21.212121 12.121212 30.30303 0 2 257 14.141414 31.313131 12.121212 42.424242 0 2 258 36.363636 20.20202 25.252525 18.181818 0 2 259 40.40404 19.191919 15.151515 25.252525 0 2 260 20.20202 30.30303 20.20202 29.292929 0 2 261 32.323232 20.20202 14.141414 33.333333 0 2 262 28.282828 18.181818 25.252525 28.282828 0 2 263 25.252525 29.292929 16.161616 29.292929 0 2 264 31.313131 20.20202 16.161616 32.323232 0 2 265 24.242424 21.212121 27.272727 26.262626 1.010101 2 266 31.313131 16.161616 28.282828 24.242424 0 2 267 30.30303 23.232323 12.121212 34.343434 0 2 268 27.272727 20.20202 18.181818 34.343434 0 2 269 30.30303 29.292929 19.191919 21.212121 0 2 270 28.282828 28.282828 18.181818 25.252525 0 2 271 22.222222 24.242424 16.161616 37.373737 0 2 272 42.424242 18.181818 18.181818 21.212121 0 2 273 25.252525 29.292929 15.151515 30.30303 0 2 274 34.343434 19.191919 12.121212 33.333333 1.010101 2 275 27.272727 12.121212 21.212121 39.393939 0 2 276 24.242424 28.282828 11.111111 36.363636 0 2 277 35.353535 16.161616 17.171717 31.313131 0 2 278 32.323232 15.151515 24.242424 28.282828 0 2 279 33.333333 19.191919 18.181818 29.292929 0 2 280 31.313131 33.333333 17.171717 18.181818 0 2 281 27.272727 22.222222 11.111111 39.393939 0 2 282 30.30303 30.30303 13.131313 26.262626 0 2 283 38.383838 21.212121 19.191919 21.212121 0 2 284 27.272727 19.191919 18.181818 35.353535 0 2 285 27.272727 23.232323 14.141414 35.353535 0 2 286 35.353535 32.323232 12.121212 20.20202 0 2 287 33.333333 27.272727 13.131313 26.262626 0 2 288 43.434343 27.272727 8.080808 21.212121 0 2 289 22.222222 34.343434 16.161616 27.272727 0 2 290 23.232323 40.40404 20.20202 16.161616 0 2 291 30.30303 26.262626 11.111111 32.323232 0 2 292 31.313131 27.272727 20.20202 21.212121 0 2 293 34.343434 30.30303 14.141414 21.212121 0 2 294 19.191919 32.323232 12.121212 36.363636 0 2 295 17.171717 32.323232 17.171717 33.333333 0 2 296 29.292929 20.20202 23.232323 27.272727 0 2 297 29.292929 22.222222 20.20202 28.282828 0 2 298 22.222222 29.292929 17.171717 31.313131 0 2 299 32.323232 28.282828 14.141414 25.252525 0 2 300 27.272727 29.292929 14.141414 29.292929 0 2 301 30.30303 18.181818 11.111111 40.40404 0 2 302 40.40404 29.292929 12.121212 18.181818 0 2 303 30.30303 30.30303 13.131313 26.262626 0 2 304 14.141414 39.393939 14.141414 32.323232 0 2 305 35.353535 21.212121 22.222222 21.212121 0 2 306 24.242424 30.30303 9.090909 36.363636 0 2 307 27.272727 22.222222 14.141414 36.363636 0 2 308 21.212121 32.323232 14.141414 32.323232 0 2 309 17.171717 36.363636 19.191919 27.272727 0 2 310 34.343434 29.292929 18.181818 18.181818 0 2 311 24.242424 27.272727 17.171717 31.313131 0 2 312 22.222222 31.313131 16.161616 30.30303 0 2 313 27.272727 24.242424 14.141414 34.343434 0 2 314 24.242424 40.40404 13.131313 22.222222 0 2 315 32.323232 25.252525 21.212121 21.212121 0 2 316 30.30303 20.20202 17.171717 32.323232 0 2 317 25.252525 21.212121 18.181818 35.353535 0 2 318 38.383838 18.181818 24.242424 19.191919 0 2 319 23.232323 21.212121 22.222222 33.333333 0 2 320 29.292929 21.212121 19.191919 30.30303 0 2 321 32.323232 23.232323 12.121212 32.323232 0 2 322 11.111111 36.363636 24.242424 28.282828 0 2 323 27.272727 33.333333 20.20202 19.191919 0 2 324 24.242424 25.252525 17.171717 33.333333 0 2 325 21.212121 32.323232 13.131313 33.333333 0 2 326 30.30303 17.171717 14.141414 38.383838 0 2 327 24.242424 32.323232 21.212121 22.222222 0 2 328 30.30303 15.151515 24.242424 30.30303 0 2 329 25.252525 35.353535 20.20202 19.191919 0 2 330 16.161616 26.262626 25.252525 32.323232 0 2 331 26.262626 19.191919 28.282828 26.262626 0 2 332 20.20202 27.272727 25.252525 27.272727 0 2 333 29.292929 37.373737 15.151515 18.181818 0 2 334 24.242424 22.222222 17.171717 36.363636 0 2 335 13.131313 39.393939 22.222222 25.252525 0 2 336 25.252525 26.262626 14.141414 34.343434 0 2 337 18.181818 34.343434 28.282828 19.191919 0 2 338 25.252525 20.20202 13.131313 41.414141 0 2 339 28.282828 29.292929 25.252525 17.171717 0 2 340 15.151515 30.30303 24.242424 30.30303 0 2 341 19.191919 32.323232 15.151515 33.333333 0 2 342 26.262626 38.383838 15.151515 20.20202 0 2 343 27.272727 31.313131 13.131313 28.282828 0 2 344 23.232323 29.292929 24.242424 23.232323 0 2 345 24.242424 27.272727 14.141414 34.343434 0 2 346 17.171717 30.30303 22.222222 29.292929 1.010101 2 347 33.333333 27.272727 14.141414 25.252525 0 2 348 20.20202 34.343434 18.181818 27.272727 0 2 349 17.171717 34.343434 20.20202 27.272727 1.010101 2 350 19.191919 28.282828 29.292929 23.232323 0 2 351 20.20202 25.252525 16.161616 38.383838 0 2 352 28.282828 32.323232 27.272727 12.121212 0 2 353 18.181818 23.232323 26.262626 32.323232 0 2 354 27.272727 13.131313 29.292929 30.30303 0 2 355 24.242424 23.232323 26.262626 26.262626 0 2 356 24.242424 22.222222 32.323232 21.212121 0 2 357 23.232323 38.383838 18.181818 20.20202 0 2 358 17.171717 35.353535 24.242424 22.222222 1.010101 2 359 28.282828 32.323232 22.222222 16.161616 1.010101 2 360 21.212121 39.393939 14.141414 25.252525 0 2 361 9.090909 28.282828 30.30303 31.313131 1.010101 2 362 25.252525 33.333333 22.222222 18.181818 1.010101 2 363 34.343434 13.131313 30.30303 21.212121 1.010101 2 364 12.121212 29.292929 26.262626 31.313131 1.010101 2 365 11.111111 23.232323 43.434343 22.222222 0 2 366 23.232323 26.262626 22.222222 28.282828 0 2 367 17.171717 28.282828 36.363636 18.181818 0 2 368 23.232323 21.212121 21.212121 34.343434 0 2 369 28.282828 19.191919 30.30303 22.222222 0 2 370 16.161616 32.323232 22.222222 29.292929 0 2 371 22.222222 25.252525 26.262626 26.262626 0 2 372 20.20202 28.282828 28.282828 22.222222 1.010101 2 373 20.20202 28.282828 20.20202 31.313131 0 2 374 16.161616 33.333333 24.242424 26.262626 0 2 375 5.050505 43.434343 23.232323 28.282828 0 2 376 22.222222 22.222222 24.242424 31.313131 0 2 377 25.252525 26.262626 19.191919 29.292929 0 2 378 25.252525 12.121212 26.262626 36.363636 0 2 379 13.131313 42.424242 23.232323 21.212121 0 2 380 30.30303 16.161616 37.373737 16.161616 0 2 381 13.131313 23.232323 19.191919 44.444444 0 2 382 15.151515 29.292929 35.353535 20.20202 0 2 383 12.121212 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27.272727 27.272727 31.313131 0 2 405 15.151515 29.292929 21.212121 34.343434 0 2 406 25.252525 23.232323 22.222222 29.292929 0 2 407 13.131313 35.353535 24.242424 27.272727 0 2 408 29.292929 23.232323 31.313131 16.161616 0 2 409 22.222222 33.333333 20.20202 24.242424 0 2 410 23.232323 18.181818 41.414141 17.171717 0 2 411 17.171717 29.292929 24.242424 29.292929 0 2 412 18.181818 30.30303 38.383838 13.131313 0 2 413 26.262626 23.232323 16.161616 34.343434 0 2 414 9.090909 29.292929 27.272727 34.343434 0 2 415 16.161616 19.191919 20.20202 44.444444 0 2 416 22.222222 24.242424 29.292929 24.242424 0 2 417 10.10101 39.393939 27.272727 23.232323 0 2 418 30.30303 16.161616 36.363636 17.171717 0 2 419 14.141414 27.272727 28.282828 30.30303 0 2 420 21.212121 18.181818 25.252525 35.353535 0 2 421 24.242424 19.191919 32.323232 24.242424 0 2 422 10.10101 36.363636 25.252525 28.282828 0 2 423 22.222222 23.232323 29.292929 25.252525 0 2 424 23.232323 25.252525 25.252525 26.262626 0 2 425 18.181818 26.262626 30.30303 25.252525 0 2 426 24.242424 27.272727 26.262626 22.222222 0 2 427 19.191919 32.323232 28.282828 20.20202 0 2 428 18.181818 27.272727 22.222222 32.323232 0 2 429 23.232323 31.313131 24.242424 21.212121 0 2 430 16.161616 23.232323 17.171717 43.434343 0 2 431 24.242424 25.252525 30.30303 20.20202 0 2 432 17.171717 26.262626 28.282828 28.282828 0 2 433 21.212121 18.181818 22.222222 38.383838 0 2 434 29.292929 15.151515 27.272727 28.282828 0 2 435 10.10101 34.343434 25.252525 30.30303 0 2 436 19.191919 36.363636 29.292929 15.151515 0 2 437 28.282828 27.272727 31.313131 13.131313 0 2 438 18.181818 28.282828 25.252525 28.282828 0 2 439 31.313131 28.282828 21.212121 19.191919 0 2 440 20.20202 31.313131 25.252525 23.232323 0 2 441 19.191919 35.353535 17.171717 28.282828 0 2 442 31.313131 23.232323 26.262626 19.191919 0 2 443 20.20202 25.252525 12.121212 42.424242 0 2 444 23.232323 26.262626 25.252525 25.252525 0 2 445 14.141414 30.30303 27.272727 28.282828 0 2 446 25.252525 24.242424 25.252525 25.252525 0 2 447 21.212121 27.272727 23.232323 28.282828 0 2 448 28.282828 22.222222 21.212121 28.282828 0 2 449 26.262626 33.333333 25.252525 15.151515 0 2 450 17.171717 23.232323 21.212121 38.383838 0 2 451 25.252525 36.363636 13.131313 25.252525 0 2 452 31.313131 21.212121 22.222222 25.252525 0 2 453 24.242424 27.272727 16.161616 32.323232 0 2 454 26.262626 27.272727 23.232323 23.232323 0 2 455 28.282828 24.242424 28.282828 19.191919 0 2 456 26.262626 16.161616 27.272727 30.30303 0 2 457 30.30303 26.262626 19.191919 24.242424 0 2 458 22.222222 19.191919 22.222222 36.363636 0 2 459 17.171717 42.424242 21.212121 19.191919 0 2 460 22.222222 23.232323 11.111111 43.434343 0 2 461 21.212121 34.343434 26.262626 18.181818 0 2 462 24.242424 29.292929 13.131313 33.333333 0 2 463 25.252525 34.343434 14.141414 26.262626 0 2 464 21.212121 28.282828 17.171717 33.333333 0 2 465 19.191919 26.262626 23.232323 31.313131 0 2 466 21.212121 28.282828 18.181818 32.323232 0 2 467 34.343434 20.20202 23.232323 22.222222 0 2 468 30.30303 27.272727 18.181818 24.242424 0 2 469 21.212121 32.323232 15.151515 31.313131 0 2 470 21.212121 25.252525 16.161616 37.373737 0 2 471 25.252525 28.282828 18.181818 28.282828 0 2 472 27.272727 22.222222 22.222222 28.282828 0 2 473 22.222222 24.242424 15.151515 38.383838 0 2 474 20.20202 32.323232 22.222222 25.252525 0 2 475 25.252525 37.373737 10.10101 27.272727 0 2 476 14.141414 47.474747 18.181818 20.20202 0 2 477 18.181818 34.343434 15.151515 32.323232 0 2 478 27.272727 31.313131 16.161616 25.252525 0 2 479 28.282828 27.272727 17.171717 27.272727 0 2 480 19.191919 21.212121 21.212121 38.383838 0 2 481 20.20202 25.252525 22.222222 32.323232 0 2 482 27.272727 39.393939 18.181818 15.151515 0 2 483 27.272727 20.20202 14.141414 38.383838 0 2 484 23.232323 38.383838 13.131313 25.252525 0 2 485 24.242424 34.343434 16.161616 25.252525 0 2 486 19.191919 28.282828 15.151515 37.373737 0 2 487 30.30303 29.292929 15.151515 25.252525 0 2 488 31.313131 29.292929 12.121212 27.272727 0 2 489 16.161616 30.30303 24.242424 29.292929 0 2 490 35.353535 14.141414 10.10101 40.40404 0 2 491 32.323232 20.20202 20.20202 27.272727 0 2 492 30.30303 25.252525 14.141414 30.30303 0 2 493 32.323232 23.232323 15.151515 29.292929 0 2 494 24.242424 19.191919 20.20202 36.363636 0 2 495 27.272727 25.252525 14.141414 33.333333 0 2 496 37.373737 30.30303 12.121212 20.20202 0 2 497 21.212121 41.414141 12.121212 25.252525 0 2 498 37.373737 17.171717 10.10101 35.353535 0 2 499 23.232323 21.212121 21.212121 34.343434 0 2 500 28.282828 28.282828 16.161616 27.272727 0 2 501 41.414141 29.292929 10.10101 19.191919 0 2 502 18.181818 31.313131 25.252525 25.252525 0