directory /test-data/ @ 17:fc288950c3b7 draft

name size permissions
[up] drwxr-xr-x
file picard_ARRG.bam 38188 -rw-r--r--
file picard_ARRG_test1.bam 39549 -rw-r--r--
file picard_AddCommentsToBam.bam 38188 -rw-r--r--
file picard_AddCommentsToBam_test1.bam 38715 -rw-r--r--
file picard_BedToIntervalList.bed 113 -rw-r--r--
file picard_BedToIntervalList_ref.fa 16813 -rw-r--r--
file picard_BedToIntervalList_test1.pif 277 -rw-r--r--
file picard_CASM.bam 38188 -rw-r--r--
file picard_CASM_ref.fa 16882 -rw-r--r--
file picard_CASM_test1.tab 1784 -rw-r--r--
file picard_CleanSam.bam 38188 -rw-r--r--
file picard_CleanSam_test1.bam 39284 -rw-r--r--
file picard_CollectBaseDistributionByCycle.bam 38188 -rw-r--r--
file picard_CollectBaseDistributionByCycle_ref.fa 16882 -rw-r--r--
file picard_CollectBaseDistributionByCycle_test1.tab 17692 -rw-r--r--
file picard_CollectGcBiasMetrics.bam 38188 -rw-r--r--
file picard_CollectGcBiasMetrics_ref.fa 16882 -rw-r--r--
file picard_CollectGcBiasMetrics_test1.tab 3941 -rw-r--r--
file picard_CollectInsertSizeMetrics.bam 38188 -rw-r--r--
file picard_CollectInsertSizeMetrics_ref.fa 16882 -rw-r--r--
file picard_CollectInsertSizeMetrics_test1.tab 1519 -rw-r--r--
file picard_CollectRnaSeqMetrics.bam 44515 -rw-r--r--
file picard_CollectRnaSeqMetrics.gff3 5458 -rw-r--r--
file picard_CollectRnaSeqMetrics.gtf 2296 -rw-r--r--
file picard_CollectRnaSeqMetrics.refFlat 1586 -rw-r--r--
file picard_CollectRnaSeqMetrics_ref.fa 16813 -rw-r--r--
file picard_CollectRnaSeqMetrics_test1.tab 2547 -rw-r--r--
file picard_CollectRnaSeqMetrics_test2.tab 1203 -rw-r--r--
file picard_CollectRnaSeqMetrics_test3.tab 2535 -rw-r--r--
file picard_CollectWgsMetrics.bam 44515 -rw-r--r--
file picard_CollectWgsMetrics_ref.fa 16813 -rw-r--r--
file picard_CollectWgsMetrics_test1.tab 2644 -rw-r--r--
file picard_DownsampleSam.bam 38188 -rw-r--r--
file picard_DownsampleSam_test1.bam 5515 -rw-r--r--
file picard_EstimateLibraryComplexity.bam 212398 -rw-r--r--
file picard_EstimateLibraryComplexity_test1.tab 1075 -rw-r--r--
file picard_FastqToSam_read1.fq 552531 -rw-r--r--
file picard_FastqToSam_read2.fq 552531 -rw-r--r--
file picard_FastqToSam_test1.bam 280189 -rw-r--r--
file picard_FilterSamReads.bam 24667 -rw-r--r--
file picard_FilterSamReads_exclude_reads_test2.bam 20914 -rw-r--r--
file picard_FilterSamReads_include_reads_test1.bam 5273 -rw-r--r--
file picard_FilterSamReads_read_list_file.tab 867 -rw-r--r--
file picard_FixMateInformation.bam 24667 -rw-r--r--
file picard_FixMateInformation_test1.bam 25362 -rw-r--r--
file picard_MarkDuplicates.bam 24667 -rw-r--r--
file picard_MarkDuplicatesWithMateCigar.bam 25357 -rw-r--r--
file picard_MarkDuplicatesWithMateCigar_test1.bam 25999 -rw-r--r--
file picard_MarkDuplicates_test1.bam 25941 -rw-r--r--
file picard_MeanQualityByCycle.bam 24667 -rw-r--r--
file picard_MeanQualityByCycle_ref.fa 16813 -rw-r--r--
file picard_MeanQualityByCycle_test1.tab 5537 -rw-r--r--
file picard_MergeBamAlignment_aligned.bam 24667 -rw-r--r--
file picard_MergeBamAlignment_ref.fa 16813 -rw-r--r--
file picard_MergeBamAlignment_test1.bam 25562 -rw-r--r--
file picard_MergeBamAlignment_unaligned.bam 24364 -rw-r--r--
file picard_MergeSamFiles_input1.bam 212398 -rw-r--r--
file picard_MergeSamFiles_input2.bam 212604 -rw-r--r--
file picard_MergeSamFiles_input3.bam 224562 -rw-r--r--
file picard_MergeSamFiles_test1.bam 663415 -rw-r--r--
file picard_NormalizeFasta_ref.fa 16813 -rw-r--r--
file picard_NormalizeFasta_test1.fa 16990 -rw-r--r--
file picard_QualityScoreDistribution.bam 212373 -rw-r--r--
file picard_QualityScoreDistribution_ref.fa 16813 -rw-r--r--
file picard_QualityScoreDistribution_test1.tab 986 -rw-r--r--
file picard_ReorderSam.bam 212373 -rw-r--r--
file picard_ReorderSam_ref.fa 16813 -rw-r--r--
file picard_ReorderSam_test1.bam 216717 -rw-r--r--
file picard_ReplaceSamHeader.bam 212398 -rw-r--r--
file picard_ReplaceSamHeader_header.bam 212604 -rw-r--r--
file picard_ReplaceSamHeader_test1.bam 216684 -rw-r--r--
file picard_RevertOriginalBaseQualitiesAndAddMateCigar.bam 212398 -rw-r--r--
file picard_RevertOriginalBaseQualitiesAndAddMateCigar_test1.bam 216858 -rw-r--r--
file picard_RevertSam.bam 212398 -rw-r--r--
file picard_RevertSam_test1.bam 215777 -rw-r--r--
file picard_SamToFastq.bam 218440 -rw-r--r--
file picard_SamToFastq_test1.fq 986280 -rw-r--r--
file picard_SortSam.bam 212398 -rw-r--r--
file picard_SortSam_test1.bam 216684 -rw-r--r--
file picard_SortSam_test1.sam 0 -rw-r--r--
file picard_ValidateSamFile.bam 212373 -rw-r--r--
file picard_ValidateSamFile_ref.fa 16813 -rw-r--r--
file picard_ValidateSamFile_test1.txt 10304 -rw-r--r--