# HG changeset patch
# User iuc
# Date 1486575935 18000
# Node ID 6741a8ace6580a33c857ea95a40c65afe04c8888
# Parent  00fe2ff644674f4f1d5ababfa1237b7ee195c418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

diff -r 00fe2ff64467 -r 6741a8ace658 picard_CollectRnaSeqMetrics.xml
--- a/picard_CollectRnaSeqMetrics.xml	Thu Dec 08 06:43:38 2016 -0500
+++ b/picard_CollectRnaSeqMetrics.xml	Wed Feb 08 12:45:35 2017 -0500
@@ -228,8 +228,8 @@
 
    RIBOSOMAL_INTERVALS=File      Location of rRNA sequences in genome, in interval_list format.  If not specified no bases
                                  will be identified as being ribosomal. Format described here:
-                                 http://picard.sourceforge.net/javadoc/net/sf/picard/util/IntervalList.html  and can be
-				 generated from BED datasetes using Galaxy's wrapper for picard_BedToIntervalList tool
+                                 https://samtools.github.io/htsjdk/javadoc/htsjdk/htsjdk/samtools/util/IntervalList.html and can be
+                                 generated from BED datasetes using Galaxy's wrapper for picard_BedToIntervalList tool
 
    STRAND_SPECIFICITY=StrandSpecificity
    STRAND=StrandSpecificity      For strand-specific library prep. For unpaired reads, use FIRST_READ_TRANSCRIPTION_STRAND
diff -r 00fe2ff64467 -r 6741a8ace658 picard_macros.xml
--- a/picard_macros.xml	Thu Dec 08 06:43:38 2016 -0500
+++ b/picard_macros.xml	Wed Feb 08 12:45:35 2017 -0500
@@ -32,7 +32,7 @@
 
 **Additional information**
 
-Additional information about Picard tools is available from Picard web site at http://broadinstitute.github.io/picard/.
+Additional information about Picard tools is available from Picard web site at http://broadinstitute.github.io/picard/ .
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