Mercurial > repos > jjohnson > defuse

diff create_reference_dataset.xml @ 17:c3167ccca38c draft default tip

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit d2317dff5a89016f18038b97d057f47d949e7808-dirty
author jjohnson
date Sat, 26 Jan 2019 12:53:08 -0500
parents bdd93719cede
children
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--- a/create_reference_dataset.xml	Mon Dec 18 09:31:31 2017 -0500
+++ b/create_reference_dataset.xml	Sat Jan 26 12:53:08 2019 -0500
@@ -164,7 +164,7 @@
 ncbi_prefix = $genome.ncbi_prefix
 
 # Directory where you want your dataset
-dataset_directory = $config_txt.dataset.extra_files_path
+dataset_directory = $config_txt.extra_files_path
 
 #raw
 # Input genome and gene models
@@ -267,7 +267,7 @@
 ## copy config to output
 cp $defuse_config $config_txt
 ## make a data_dir  and ln -s the input fastq
-mkdir -p $config_txt.dataset.extra_files_path
+mkdir -p $config_txt.files_path
 ## create_reference_dataset.pl
 perl \${DEFUSE_PATH}/scripts/create_reference_dataset.pl -c $defuse_config 
   </configfile>