Mercurial > repos > john-mccallum > pcr_markers

diff patman.xml @ 1:a0689dc29b7f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated vcf to gff conversion tool
author john-mccallum
date Tue, 31 Jul 2012 00:33:11 -0400
parents 21053f7f9ed1
children
line wrap: on
line diff
--- a/patman.xml	Thu Jun 14 19:29:26 2012 -0400
+++ b/patman.xml	Tue Jul 31 00:33:11 2012 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool id="patman_1" name="search for patterns in DNA using PatMaN">
   <description>search for approximate patterns in DNA libraries</description>
-  <command>patman -a -e $edits -g $gaps -D $inputfastaFile -P $inputPatfile | sort | uniq > $patman_outputfile  </command>
+  <command>patman  -a -e $edits -g $gaps -D $inputfastaFile -P $inputPatfile | sort | uniq > $patman_outputfile  </command>
   <inputs>
   <param  name="edits" type="integer" label="max N mismatches and or gaps" value="0" size="1" />
   <param name="gaps" type="integer" label="max N gaps" value="0" size="1"/>