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comparison genome_diversity/src/coverage.c @ 24:248b06e86022

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Added gd_genotype datatype. Modified tools to support new datatype.
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 28 May 2013 16:24:19 -0400
parents 2c498d40ecde
children
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23:66a183c44dd5 24:248b06e86022
15 */ 15 */
16 16
17 #include "lib.h" 17 #include "lib.h"
18 18
19 // maximum length of a line from the table 19 // maximum length of a line from the table
20 #define MOST 5000 20 #define MOST 50000
21 21
22 // the largest coverage or quality value being considered 22 // the largest coverage or quality value being considered
23 #define MAX_VAL 1000 23 #define MAX_VAL 5000
24 24
25 FILE *gp; // for text output 25 FILE *gp; // for text output
26 26
27 // a population is the set of all indivuals with the same name 27 // a population is the set of all indivuals with the same name
28 // (perhaps just a single individual) 28 // (perhaps just a single individual)