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comparison tools/fastq_paired_unpaired/README.rst @ 10:4851620acfda draft

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Bump Biopython dependency
author peterjc
date Thu, 30 Nov 2023 09:50:55 +0000
parents 8cbc866b72ce
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9:422724644e24 10:4851620acfda
1 Galaxy tool to divide FASTQ files into paired and unpaired reads 1 Galaxy tool to divide FASTQ files into paired and unpaired reads
2 ================================================================ 2 ================================================================
3 3
4 This tool is copyright 2010-2017 by Peter Cock, The James Hutton Institute 4 This tool is copyright 2010-2023 by Peter Cock, The James Hutton Institute
5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. 5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
6 See the licence text below (MIT licence). 6 See the licence text below (MIT licence).
7 7
8 This tool is a short Python script which divides a FASTQ file into paired 8 This tool is a short Python script which divides a FASTQ file into paired
9 reads, and single or orphan reads. You can have separate files for the 9 reads, and single or orphan reads. You can have separate files for the
74 v0.1.3 - Minor internal changes to Python script for error reporting & style. 74 v0.1.3 - Minor internal changes to Python script for error reporting & style.
75 - Updated to point at Biopython 1.67 (latest version in Tool Shed). 75 - Updated to point at Biopython 1.67 (latest version in Tool Shed).
76 - Explicit dependency on ``galaxy_sequence_utils``. 76 - Explicit dependency on ``galaxy_sequence_utils``.
77 v0.1.4 - Use ``<command detect_errors="aggressive">`` (internal change only). 77 v0.1.4 - Use ``<command detect_errors="aggressive">`` (internal change only).
78 - Single quote command line arguments (internal change only). 78 - Single quote command line arguments (internal change only).
79 v0.1.5 - Bump Biopython dependency version for Python 3 fixes.
79 ======= ====================================================================== 80 ======= ======================================================================
80 81
81 82
82 Developers 83 Developers
83 ========== 84 ==========