Mercurial > repos > peterjc > get_orfs_or_cdss
comparison tools/filters/get_orfs_or_cdss.xml @ 2:324775a016ce draft
Uploaded v0.0.3, bundle Ssuis.fasta test file X record Python script version
| author | peterjc |
|---|---|
| date | Tue, 23 Apr 2013 11:48:43 -0400 |
| parents | 922d69bd5258 |
| children |
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| 1:922d69bd5258 | 2:324775a016ce |
|---|---|
| 1 <tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.0.2"> | 1 <tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.0.3"> |
| 2 <description>e.g. to get peptides from ESTs</description> | 2 <description>e.g. to get peptides from ESTs</description> |
| 3 <version_command interpreter="python">get_orfs_or_cdss.py --version</version_command> | |
| 3 <command interpreter="python"> | 4 <command interpreter="python"> |
| 4 get_orfs_or_cdss.py $input_file $input_file.ext $table $ftype $ends $mode $min_len $strand $out_nuc_file $out_prot_file | 5 get_orfs_or_cdss.py $input_file $input_file.ext $table $ftype $ends $mode $min_len $strand $out_nuc_file $out_prot_file |
| 5 </command> | 6 </command> |
| 6 <stdio> | 7 <stdio> |
| 7 <!-- Anything other than zero is an error --> | 8 <!-- Anything other than zero is an error --> |