Mercurial > repos > peterjc > seq_filter_by_id

annotate test-data/k12_ten_proteins.fasta @ 3:44ab4c0f7683 draft

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Uploaded v0.0.6, automatic dependency on Biopython 1.62, new README file, citation information, MIT licence
author peterjc
date Fri, 11 Oct 2013 04:37:12 -0400
parents 262f08104540
children
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1
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
peterjc
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1 >gi|16127995|ref|NP_414542.1| thr operon leader peptide [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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2 MKRISTTITTTITITTGNGAG
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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3 >gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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4 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERI
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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5 FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEA
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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6 RGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYS
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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7 AAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPC
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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8 LIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLIT
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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9 QSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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10 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSW
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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11 LKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAV
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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12 ADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELM
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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13 KFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIE
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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14 IEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFK
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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15 VKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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16 >gi|16127997|ref|NP_414544.1| homoserine kinase [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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17 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWE
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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18 RFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHY
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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19 DNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGF
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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20 IHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVA
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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21 DWLGKNYLQNQEGFVHICRLDTAGARVLEN
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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22 >gi|16127998|ref|NP_414545.1| threonine synthase [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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23 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILSAFIGDEIPQE
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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24 ILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAA
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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25 VAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNS
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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26 ANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVP
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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27 RFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTS
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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28 EPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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29 RKLMMNHQ
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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30 >gi|16127999|ref|NP_414546.1| hypothetical protein b0005 [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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31 MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHL
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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32 HGPPPPPRHHKKAPHDHHGGHGPGKHHR
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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33 >gi|16128000|ref|NP_414547.1| peroxide resistance protein, lowers intracellular iron [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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34 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPD
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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35 FTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARG
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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36 KDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKK
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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37 ARGLMSRFIIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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38 >gi|16128001|ref|NP_414548.1| putative transporter [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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39 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAA
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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40 RVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMR
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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41 WMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPL
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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42 MAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPN
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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43 AAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAE
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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44 FVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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45 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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46 >gi|16128002|ref|NP_414549.1| transaldolase B [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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47 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQI
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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48 VDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGI
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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49 RAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIY
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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50 QYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESE
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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51 FLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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52 >gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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53 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLV
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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54 LTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIK
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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55 ETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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56 >gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family [Escherichia coli str. K-12 substr. MG1655]
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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57 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKKGNTFGLTAFT
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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58 SYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAI
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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59 GNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRTVLPIGESH
262f08104540 Uploaded v0.0.4 which includes a unit test and is faster at filtering FASTA files with large records (e.g. whole chromosomes)
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60