changeset 5:1a83f5ab9e95 draft

Uploaded v0.0.8, corrected automated dependency definition
author peterjc
date Thu, 21 Nov 2013 04:54:59 -0500
parents 6842c0c7bc70
children 91f55ee8fea5
files tools/seq_select_by_id/README.rst tools/seq_select_by_id/repository_dependencies.xml tools/seq_select_by_id/tool_dependencies.xml
diffstat 3 files changed, 9 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tools/seq_select_by_id/README.rst	Mon Oct 28 05:21:45 2013 -0400
+++ b/tools/seq_select_by_id/README.rst	Thu Nov 21 04:54:59 2013 -0500
@@ -73,6 +73,7 @@
         - Fixed Biopython dependency setup.
         - Development moved to GitHub, https://github.com/peterjc/pico_galaxy
         - Renamed folder and adopted README.rst naming.
+v0.0.8  - Corrected automated dependency definition
 ======= ======================================================================
 
 
@@ -88,7 +89,7 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder::
 
-    $ tar -czf seq_select_by_id.tar.gz tools/seq_select_by_id/README.rst tools/seq_select_by_id/seq_select_by_id.* tools/seq_select_by_id/repository_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular
+    $ tar -czf seq_select_by_id.tar.gz tools/seq_select_by_id/README.rst tools/seq_select_by_id/seq_select_by_id.* tools/seq_select_by_id/tool_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular
 
 Check this worked::
 
@@ -96,7 +97,7 @@
     tools/seq_select_by_id/README.rst
     tools/seq_select_by_id/seq_select_by_id.py
     tools/seq_select_by_id/seq_select_by_id.xml
-    tools/seq_select_by_id/repository_dependencies.xml
+    tools/seq_select_by_id/tool_dependencies.xml
     test-data/k12_ten_proteins.fasta
     test-data/k12_hypothetical.fasta
     test-data/k12_hypothetical.tabular
--- a/tools/seq_select_by_id/repository_dependencies.xml	Mon Oct 28 05:21:45 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<repositories description="This requires Biopython as a dependency.">
-<!-- Leave out the tool shed and revision to get the current
-     tool shed and latest revision at the time of upload -->
-<repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" />
-</repositories>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/seq_select_by_id/tool_dependencies.xml	Thu Nov 21 04:54:59 2013 -0500
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="biopython" version="1.62">
+        <repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>