What it does ?

This tool generates factor information file used by other tools of GIANT tool suite.

Parameters

- Title to personalize output file names (please avoid special characters and spaces).

- Input Data used only to extract sample names

• Expression tabular file with samples as columns and genes as rows (only the header row will be used to extract sample names).

  Conditions  157_(HuGene-2_0-st).CEL 156_(HuGene-2_0-st).CEL  155_(HuGene-2_0-st).CEL    154_(HuGene-2_0-st).CEL
  DDX11L2     4.500872                4.429759                 4.780281                   4.996189
  MIR1302-2   3.415065                3.520472                 3.471503                   3.567988
  OR4F5       3.737956                3.011586                 3.424494                   3.497545
  VWA1        5.189621                5.129595                 4.806793                   5.227014
  

OR

• .CEL files of your study (you should select multiple .CEL files).

OR

• .CEL file collection of your study (you should select a unique collection file).

  - Individual selection of files to associate to factor values.

  or

  - Tag selection to associate samples sharing the same tag to factor values.

- Factor definition

• Factor name to discriminate between samples as 'Treatments', 'Year', 'Strain' (please avoid special characters)
• Value name of different states for the current factor as 'KO' or 'WT' for 'Strain' factor (please avoid special characters)
• Select sample/tag to assign to current value

Outputs

• Factor information tabular file with factors as columns and samples as rows (header row contains factor names and first column sample names).

  Conditions                Sex   Treatment Reaction
  138_(HuGene-2_0-st).CEL   1     TreatA    Pos
  148_(HuGene-2_0-st).CEL   0     NoTreat   Pos
  139_(HuGene-2_0-st).CEL   0     TreatB    Neg
  149_(HuGene-2_0-st).CEL   0     NoTreat   Neg
  

• LOG file for job log. If you see errors, please attached this in the bug report