Quickly retrieves one or more profile HMMs from an <hmmfile> (a large Pfam database, for example). The profile names should be listed in a text file, separated by newlines
By default, fetched HMMs are printed to standard output in HMMER3 format.
This Galaxy tool relies on HMMER3 Internally the software is cited as:
# hmmscan :: search sequence(s) against a profile database # HMMER 3.1 (February 2013); http://hmmer.org/ # Copyright (C) 2011 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
The wrappers were written by the IUC and are licensed under Apache2. The documentation is copied from the HMMER3 documentation.