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VCFtools (version 0.0.1)

Input vcf file:

Basic Options:

Include chromosomes to be processeds

Include chromosomes to be processed 0

Exclude chromosomes from processings

Exclude chromosomes from processing 0

Beginning of range to be processed:

only if chromosomes are included. You must also specify the end of range to be processed.

End of range to be processed:

only if chromosomes are included. You must also specify the beginning of range to be processed.

SNPs to includes

SNPs to include 0

List of SNPs to include:

The file should contain a list of SNP IDs (e.g. dbSNP rsIDs), with one ID per line.

List of SNPs to disclude:

The file should contain a list of SNP IDs (e.g. dbSNP rsIDs), with one ID per line.

Indel options:

Remove all sites with the FILTER tag:

Recode to stream:

Welcome to VCFtools - a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. More information at http://vcftools.sourceforge.net/index.html.