pyGetGTFSources

pyGetGTFSources is part of the pyCRAC package. Extracts source names from the second column in a GTF file.

Parameter list

Options:

--gtf=Yourfavoritegtf.gtf
                      type the path to the gtf file that you want to use. By
                      default it expects data from the standard input
-o OUTFILE, --outfile=OUTFILE
                      type the name and path of the file you want to write
                      the output to. Default is standard output
--count               with this flag you the program will count the
                      occurence for each source/annotation in the gtf file