Galaxy tool preview

Select sequences by ID (version 0.0.3)
FASTA, QUAL, FASTQ, or SFF format.

What it does

Takes a FASTA, QUAL, FASTQ or Standard Flowgram Format (SFF) file and produces a new sequence file (of the same format) containing only the records with identifiers in the tabular file (in the order from the tabular file).

WARNING: If you have any duplicates in the tabular file identifiers, you will get duplicate sequences in the output.

Citation

This tool uses Biopython to read, write and index sequence files. If you use this tool in scientific work leading to a publication, please cite the Biopython application note (and Galaxy too of course):

Cock et al 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.