Galaxy tool preview

Rename sequences (version 0.0.1)
FASTA, QUAL, FASTQ, or SFF format.

What it does

Takes a FASTA, QUAL, FASTQ or Standard Flowgram Format (SFF) file and produces a new sequence file (of the same format) where the sequence identifiers have been renamed according two the specified columns a the tabular file.

WARNING: If you have any duplicates in the intput sequence file, you will still have duplicate sequences in the output.

WARNING: If the tabular file has more than one new name for any old ID, the last one is used.

Citation

This tool uses Biopython to read and write SFF files. If you use this tool in scientific work leading to a publication, please cite the Biopython application note (and Galaxy too of course):

Cock et al 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.