Repository 'msgfplus'
hg clone https://toolshed.g2.bx.psu.edu/repos/iracooke/msgfplus

Changeset 3:0cfe768bbda1 (2013-03-04)
Previous changeset 2:37a41ca93b5e (2013-03-04) Next changeset 4:366e62d86881 (2013-03-04)
Commit message:
Fixed tool wrapper
modified:
msgfplus_search.xml
b
diff -r 37a41ca93b5e -r 0cfe768bbda1 msgfplus_search.xml
--- a/msgfplus_search.xml Mon Mar 04 20:25:08 2013 -0500
+++ b/msgfplus_search.xml Mon Mar 04 20:33:35 2013 -0500
b
@@ -8,17 +8,6 @@
 
  <description>Run an MSGF+ Search</description>
 
-
-
- <description>Run an X!Tandem Search</description>
-
- <command>
- #if $database.source_select=="built_in":
- rvm 1.9.3@protk-1.1.9 do tandem_search.rb -d $database.dbkey 
- #else #rvm 1.9.3@protk-1.1.9 do tandem_search.rb -d $database.fasta_file
- #end if
-
-
  <command>
  #if $database.source_select=="built_in":
  rvm 1.9.3@protk-1.1.9 do msgfplus_search.rb --galaxy -d $database.dbkey