| Previous changeset 6:28d39af2dd06 (2016-01-18) Next changeset 8:06819360a9e2 (2016-10-31) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b |
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modified:
rgFastQC.py rgFastQC.xml test-data/fastqc_data.txt test-data/fastqc_data2.txt test-data/fastqc_report.html test-data/fastqc_report2.html tool_dependencies.xml |
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| diff -r 28d39af2dd06 -r 3fdc1a74d866 rgFastQC.py --- a/rgFastQC.py Mon Jan 18 09:33:58 2016 -0500 +++ b/rgFastQC.py Mon Apr 11 10:27:34 2016 -0400 |
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| @@ -154,7 +154,6 @@ assert opts.input != None assert opts.inputfilename != None assert opts.htmloutput != None - assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find executable %s' % opts.executable if not os.path.exists(opts.outputdir): os.makedirs(opts.outputdir) |
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| diff -r 28d39af2dd06 -r 3fdc1a74d866 rgFastQC.xml --- a/rgFastQC.xml Mon Jan 18 09:33:58 2016 -0500 +++ b/rgFastQC.xml Mon Apr 11 10:27:34 2016 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="fastqc" name="FastQC" version="0.64"> +<tool id="fastqc" name="FastQC" version="0.65"> <description>Read Quality reports</description> <requirements> <requirement type="package" version="0.11.4">FastQC</requirement> @@ -17,7 +17,6 @@ -t "$text_file" -f "$input_file.ext" -j "$input_file.name" - -e "\$FASTQC_JAR_PATH/fastqc" #if $contaminants.dataset and str($contaminants) > '' -c "$contaminants" #end if |
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| diff -r 28d39af2dd06 -r 3fdc1a74d866 test-data/fastqc_data.txt --- a/test-data/fastqc_data.txt Mon Jan 18 09:33:58 2016 -0500 +++ b/test-data/fastqc_data.txt Mon Apr 11 10:27:34 2016 -0400 |
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| @@ -1,4 +1,4 @@ -##FastQC 0.11.2 +##FastQC 0.11.4 >>Basic Statistics pass #Measure Value Filename 1000gsample.fastq @@ -886,49 +886,49 @@ CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (100% over 35bp) >>END_MODULE >>Adapter Content pass -#Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence -1 0.0 0.0 0.0 -2 0.02 0.0 0.0 -3 0.02 0.0 0.0 -4 0.02 0.0 0.0 -5 0.02 0.0 0.0 -6 0.02 0.0 0.0 -7 0.02 0.0 0.0 -8 0.02 0.0 0.0 -9 0.02 0.0 0.0 -10 0.02 0.0 0.0 -11 0.02 0.0 0.0 -12 0.02 0.0 0.0 -13 0.02 0.0 0.0 -14 0.02 0.0 0.0 -15 0.02 0.0 0.0 -16 0.02 0.0 0.0 -17 0.02 0.0 0.0 -18 0.02 0.0 0.0 -19 0.06 0.0 0.0 -20 0.36 0.0 0.0 -21 0.36 0.0 0.0 -22 0.36 0.0 0.0 -23 0.36 0.0 0.0 -24 0.36 0.0 0.0 -25 0.4 0.0 0.0 -26 0.4 0.0 0.0 -27 0.42 0.0 0.0 -28 0.62 0.0 0.0 -29 0.66 0.0 0.0 -30 0.68 0.0 0.0 -31 0.68 0.0 0.0 -32 0.68 0.0 0.0 -33 0.68 0.0 0.0 -34 0.7 0.0 0.0 -35 0.76 0.0 0.0 -36 0.8 0.0 0.0 -37 0.88 0.0 0.0 -38 1.0 0.0 0.0 -39 1.12 0.0 0.0 -40 1.22 0.0 0.0 -41 1.38 0.0 0.0 -42 1.48 0.0 0.0 +#Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence SOLID Small RNA Adapter +1 0.0 0.0 0.0 0.0 +2 0.02 0.0 0.0 0.0 +3 0.02 0.0 0.0 0.0 +4 0.02 0.0 0.0 0.0 +5 0.02 0.0 0.0 0.0 +6 0.02 0.0 0.0 0.0 +7 0.02 0.0 0.0 0.0 +8 0.02 0.0 0.0 0.0 +9 0.02 0.0 0.0 0.0 +10 0.02 0.0 0.0 0.0 +11 0.02 0.0 0.0 0.0 +12 0.02 0.0 0.0 0.0 +13 0.02 0.0 0.0 0.0 +14 0.02 0.0 0.0 0.0 +15 0.02 0.0 0.0 0.0 +16 0.02 0.0 0.0 0.0 +17 0.02 0.0 0.0 0.0 +18 0.02 0.0 0.0 0.0 +19 0.06 0.0 0.0 0.0 +20 0.36 0.0 0.0 0.0 +21 0.36 0.0 0.0 0.0 +22 0.36 0.0 0.0 0.0 +23 0.36 0.0 0.0 0.0 +24 0.36 0.0 0.0 0.0 +25 0.4 0.0 0.0 0.0 +26 0.4 0.0 0.0 0.0 +27 0.42 0.0 0.0 0.0 +28 0.62 0.0 0.0 0.0 +29 0.66 0.0 0.0 0.0 +30 0.68 0.0 0.0 0.0 +31 0.68 0.0 0.0 0.0 +32 0.68 0.0 0.0 0.0 +33 0.68 0.0 0.0 0.0 +34 0.7 0.0 0.0 0.0 +35 0.76 0.0 0.0 0.0 +36 0.8 0.0 0.0 0.0 +37 0.88 0.0 0.0 0.0 +38 1.0 0.0 0.0 0.0 +39 1.12 0.0 0.0 0.0 +40 1.22 0.0 0.0 0.0 +41 1.38 0.0 0.0 0.0 +42 1.48 0.0 0.0 0.0 >>END_MODULE >>Kmer Content pass >>END_MODULE |
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| diff -r 28d39af2dd06 -r 3fdc1a74d866 test-data/fastqc_data2.txt --- a/test-data/fastqc_data2.txt Mon Jan 18 09:33:58 2016 -0500 +++ b/test-data/fastqc_data2.txt Mon Apr 11 10:27:34 2016 -0400 |
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| b'@@ -1,4 +1,4 @@\n-##FastQC\t0.11.2\n+##FastQC\t0.11.4\n >>Basic Statistics\tpass\n #Measure\tValue\n Filename\t1000gsample.fastq\n@@ -66,549 +66,6 @@\n 53\t19.5852\t20.0\t14.0\t25.0\t9.0\t29.0\n 54\t19.9424\t21.0\t14.0\t26.0\t7.0\t30.0\n >>END_MODULE\n->>Per tile sequence quality\tpass\n-#Tile\tBase\tMean\n-1\t1\t0.4542485249902164\n-1\t2\t0.02493171505959424\n-1\t3\t0.004493134032774293\n-1\t4\t0.6119404948560927\n-1\t5\t0.5283275008594686\n-1\t6\t0.3741933003058371\n-1\t7\t-0.2985554485298749\n-1\t8\t0.6040181642739206\n-1\t9\t0.43795745033596845\n-1\t10\t0.05327706110314523\n-1\t11\t0.8097461135057031\n-1\t12\t0.9171964750225641\n-1\t13\t1.0716973449965757\n-1\t14\t0.562649938864773\n-1\t15\t0.5112535943737946\n-1\t16\t0.7098461441939676\n-1\t17\t0.3989886413671577\n-1\t18\t0.2351551176870892\n-1\t19\t0.002716666680861124\n-1\t20\t-0.5270840838615776\n-1\t21\t0.08959510509382795\n-1\t22\t-0.6322238602545553\n-1\t23\t-0.8566085860715056\n-1\t24\t-0.8167218970288026\n-1\t25\t0.7728199138173544\n-1\t26\t-0.26898877195552373\n-1\t27\t-0.7734079986509634\n-1\t28\t0.46313879073469266\n-1\t29\t-1.0803714983510417\n-1\t30\t-0.9107347156963463\n-1\t31\t-1.1279249650605188\n-1\t32\t0.03588141895047414\n-1\t33\t-0.3276409211703317\n-1\t34\t0.07833890179158587\n-1\t35\t-0.8393131051954583\n-1\t36\t-1.024889600311596\n-1\t37\t-1.4177418858492992\n-1\t38\t-1.912918888443187\n-1\t39\t-1.880569234686881\n-1\t40\t-0.9901560786471286\n-1\t41\t-1.9499635516515283\n-1\t42\t-2.3754765893384793\n-1\t43\t-1.6682056704307335\n-1\t44\t-2.2432919652101226\n-1\t45\t-2.1214550638335794\n-1\t46\t-1.6941624871292404\n-1\t47\t-2.261740586778952\n-1\t48\t-0.47246064535067234\n-1\t49\t-1.345180096970381\n-1\t50\t-1.3012642855865373\n-1\t51\t-1.6748103331735038\n-1\t52\t-1.4936238782530324\n-1\t53\t-0.9900326328970834\n-1\t54\t-0.9042724595665739\n-2\t1\t0.27305194379363584\n-2\t2\t-0.40803531790744074\n-2\t3\t-1.054114924575284\n-2\t4\t0.02463890755450393\n-2\t5\t-1.0899875174555511\n-2\t6\t-0.7630472369346997\n-2\t7\t-1.2563088062832328\n-2\t8\t0.09022085047660511\n-2\t9\t-0.8821890698105506\n-2\t10\t-1.0053309975049132\n-2\t11\t-1.2879339841743942\n-2\t12\t-2.149225991399902\n-2\t13\t-1.2225639492647176\n-2\t14\t-0.7472401710253394\n-2\t15\t-0.9942409111207091\n-2\t16\t-1.07061783627001\n-2\t17\t-1.0825742401957257\n-2\t18\t-1.0554431729112004\n-2\t19\t-1.374084310120118\n-2\t20\t-0.25260300938050406\n-2\t21\t-0.7384879229891972\n-2\t22\t-0.5973032253339206\n-2\t23\t-1.926205655668575\n-2\t24\t-1.8018256821325878\n-2\t25\t-1.2574609164634758\n-2\t26\t-2.588402691369442\n-2\t27\t-1.909427534670499\n-2\t28\t-2.213051685455781\n-2\t29\t-3.343130961110507\n-2\t30\t-3.447731052692685\n-2\t31\t-3.261502498638052\n-2\t32\t-2.596108813039759\n-2\t33\t-2.173306366835778\n-2\t34\t-2.968059144606464\n-2\t35\t-3.110863776746129\n-2\t36\t-3.6207381961601897\n-2\t37\t-2.8287308968383122\n-2\t38\t-2.3431997187240157\n-2\t39\t-2.7157340698517167\n-2\t40\t-2.8763587648498152\n-2\t41\t-3.221758423446399\n-2\t42\t-3.735916149778042\n-2\t43\t-2.8279126301376927\n-2\t44\t-2.034012355930514\n-2\t45\t-3.745875088253605\n-2\t46\t-3.8848828778496305\n-2\t47\t-3.6639383889767565\n-2\t48\t-3.0197133926034176\n-2\t49\t-3.1119688637591487\n-2\t50\t-2.7486391329613866\n-2\t51\t-2.4279238862870542\n-2\t52\t-3.3607789454081\n-2\t53\t-4.239849482713934\n-2\t54\t-3.3794861347802474\n-3\t1\t0.4228103978999158\n-3\t2\t1.0474512245356244\n-3\t3\t0.4013716178677811\n-3\t4\t-0.7648710993468057\n-3\t5\t1.642931737202833\n-3\t6\t0.42190790454218075\n-3\t7\t0.5808202482371243\n-3\t8\t0.22341615758495692\n-3\t9\t0.06605109582092084\n-3\t10\t1.203778733343949\n-3\t11\t-0.3886931284117985\n-3\t12\t0.31385199341721304\n-3\t13\t0.7829570997345918\n-3\t14\t-0.2772608749590866\n-3\t15\t-0.2613216564623251\n-3\t16\t-0.6475674566978924\n-3\t17\t-1.0549689951991752\n-3\t18\t-1.3066509023798005\n-3\t19\t-0.22225546263909735\n-3\t20\t-1.028310393783542\n-3\t21\t-0.3112967566675984\n-3\t22\t-0.2177311066313692\n-3\t23\t1.415409251163723\n-3\t24\t1.0256415366389788\n-3\t25\t-0.5776817584234486\n-3\t26\t0.41573809538003914\n-3\t27\t1.098163907703551\n-3\t28\t0.5095156023288965\n-3\t29\t0.6313341872676865\n-3\t30\t0.4032006243259474\n-3\t31\t-0.21733410664357322\n-3\t32\t-0.1723683023427256\n-3\t33\t-0.8558460493754616\n-3\t34\t0.4094425807213504\n-3\t35\t1.0478663819840293\n-3\t36\t2.193616531238014\n-3\t37\t0.2458032646523698\n-3\t38\t0.5829562509102146\n-3\t39\t-0.23954'..b'55226933\n-9\t35\t-0.3299113957937472\n-9\t36\t0.6554522800302856\n-9\t37\t0.16174529363787826\n-9\t38\t-0.29240606793036505\n-9\t39\t-0.46176581588346366\n-9\t40\t-0.17477146326251614\n-9\t41\t-0.3995362012241799\n-9\t42\t0.40059178672989404\n-9\t43\t-0.7929919952170579\n-9\t44\t-0.9578218797400382\n-9\t45\t0.6699979276194128\n-9\t46\t0.124640931674179\n-9\t47\t0.2408235157851486\n-9\t48\t-0.37844355133357865\n-9\t49\t0.3419993902091072\n-9\t50\t-0.8756232599455132\n-9\t51\t0.44826658990341883\n-9\t52\t0.34398295935380574\n-9\t53\t0.5347536918892395\n-9\t54\t-1.9350416903358045\n-10\t1\t1.0952741660158587\n-10\t2\t1.4967265868544644\n-10\t3\t1.317313646853286\n-10\t4\t-0.3547261718105723\n-10\t5\t-1.4614160888841212\n-10\t6\t0.29727022338276043\n-10\t7\t0.570675320700893\n-10\t8\t0.7553002155559696\n-10\t9\t-0.11076049838197832\n-10\t10\t0.9660975739236584\n-10\t11\t1.3200025237621134\n-10\t12\t0.5761708339969225\n-10\t13\t1.1742614475606779\n-10\t14\t0.49085506706990145\n-10\t15\t0.6676638507840522\n-10\t16\t0.5944615288093544\n-10\t17\t-0.2984472560687408\n-10\t18\t-0.07766539513342252\n-10\t19\t0.871947435911629\n-10\t20\t0.6934287366512422\n-10\t21\t-0.4924561769574538\n-10\t22\t0.13444280641211037\n-10\t23\t1.3356991062361878\n-10\t24\t0.6140473337404266\n-10\t25\t0.1933327343301734\n-10\t26\t1.2592163562496026\n-10\t27\t2.2112073859644212\n-10\t28\t1.7964721240680284\n-10\t29\t0.7632182452387006\n-10\t30\t1.604649899688269\n-10\t31\t1.8797673426317907\n-10\t32\t0.47690705997611715\n-10\t33\t-0.15584604937545876\n-10\t34\t1.8398773633300465\n-10\t35\t2.981199715317363\n-10\t36\t0.8110078355858406\n-10\t37\t1.8617452936378776\n-10\t38\t1.7742605987363014\n-10\t39\t3.2937897396720928\n-10\t40\t3.2918952034041524\n-10\t41\t1.3115749098869323\n-10\t42\t2.911702897841007\n-10\t43\t2.9292302270051636\n-10\t44\t1.964400342482186\n-10\t45\t0.5477757053971892\n-10\t46\t1.9135298205630704\n-10\t47\t1.2741568491184836\n-10\t48\t2.799334226444202\n-10\t49\t3.441999390209105\n-10\t50\t4.391043406721156\n-10\t51\t3.7815999232367545\n-10\t52\t1.3217607371315836\n-10\t53\t3.0125314696670173\n-10\t54\t2.2316249763308633\n->>END_MODULE\n >>Per base sequence content\tfail\n #Base\tG\tA\tT\tC\n 1\t21.5\t32.64\t25.919999999999998\t19.939999999999998\n@@ -5811,49 +5268,49 @@\n TCTACTGCCTGCACTGCCTTTTCATCTAGCTCCAATTTATATTCTTGTAGTTTA\t1\t0.02\tNo Hit\n >>END_MODULE\n >>Adapter Content\tpass\n-#Position\tIllumina Universal Adapter\tIllumina Small RNA Adapter\tNextera Transposase Sequence\n-1\t0.0\t0.0\t0.0\n-2\t0.02\t0.0\t0.0\n-3\t0.02\t0.0\t0.0\n-4\t0.02\t0.0\t0.0\n-5\t0.02\t0.0\t0.0\n-6\t0.02\t0.0\t0.0\n-7\t0.02\t0.0\t0.0\n-8\t0.02\t0.0\t0.0\n-9\t0.02\t0.0\t0.0\n-10\t0.02\t0.0\t0.0\n-11\t0.02\t0.0\t0.0\n-12\t0.02\t0.0\t0.0\n-13\t0.02\t0.0\t0.0\n-14\t0.02\t0.0\t0.0\n-15\t0.02\t0.0\t0.0\n-16\t0.02\t0.0\t0.0\n-17\t0.02\t0.0\t0.0\n-18\t0.02\t0.0\t0.0\n-19\t0.06\t0.0\t0.0\n-20\t0.36\t0.0\t0.0\n-21\t0.36\t0.0\t0.0\n-22\t0.36\t0.0\t0.0\n-23\t0.36\t0.0\t0.0\n-24\t0.36\t0.0\t0.0\n-25\t0.4\t0.0\t0.0\n-26\t0.4\t0.0\t0.0\n-27\t0.42\t0.0\t0.0\n-28\t0.62\t0.0\t0.0\n-29\t0.66\t0.0\t0.0\n-30\t0.68\t0.0\t0.0\n-31\t0.68\t0.0\t0.0\n-32\t0.68\t0.0\t0.0\n-33\t0.68\t0.0\t0.0\n-34\t0.7\t0.0\t0.0\n-35\t0.76\t0.0\t0.0\n-36\t0.8\t0.0\t0.0\n-37\t0.88\t0.0\t0.0\n-38\t1.0\t0.0\t0.0\n-39\t1.12\t0.0\t0.0\n-40\t1.22\t0.0\t0.0\n-41\t1.38\t0.0\t0.0\n-42\t1.48\t0.0\t0.0\n+#Position\tIllumina Universal Adapter\tIllumina Small RNA Adapter\tNextera Transposase Sequence\tSOLID Small RNA Adapter\n+1\t0.0\t0.0\t0.0\t0.0\n+2\t0.02\t0.0\t0.0\t0.0\n+3\t0.02\t0.0\t0.0\t0.0\n+4\t0.02\t0.0\t0.0\t0.0\n+5\t0.02\t0.0\t0.0\t0.0\n+6\t0.02\t0.0\t0.0\t0.0\n+7\t0.02\t0.0\t0.0\t0.0\n+8\t0.02\t0.0\t0.0\t0.0\n+9\t0.02\t0.0\t0.0\t0.0\n+10\t0.02\t0.0\t0.0\t0.0\n+11\t0.02\t0.0\t0.0\t0.0\n+12\t0.02\t0.0\t0.0\t0.0\n+13\t0.02\t0.0\t0.0\t0.0\n+14\t0.02\t0.0\t0.0\t0.0\n+15\t0.02\t0.0\t0.0\t0.0\n+16\t0.02\t0.0\t0.0\t0.0\n+17\t0.02\t0.0\t0.0\t0.0\n+18\t0.02\t0.0\t0.0\t0.0\n+19\t0.06\t0.0\t0.0\t0.0\n+20\t0.36\t0.0\t0.0\t0.0\n+21\t0.36\t0.0\t0.0\t0.0\n+22\t0.36\t0.0\t0.0\t0.0\n+23\t0.36\t0.0\t0.0\t0.0\n+24\t0.36\t0.0\t0.0\t0.0\n+25\t0.4\t0.0\t0.0\t0.0\n+26\t0.4\t0.0\t0.0\t0.0\n+27\t0.42\t0.0\t0.0\t0.0\n+28\t0.62\t0.0\t0.0\t0.0\n+29\t0.66\t0.0\t0.0\t0.0\n+30\t0.68\t0.0\t0.0\t0.0\n+31\t0.68\t0.0\t0.0\t0.0\n+32\t0.68\t0.0\t0.0\t0.0\n+33\t0.68\t0.0\t0.0\t0.0\n+34\t0.7\t0.0\t0.0\t0.0\n+35\t0.76\t0.0\t0.0\t0.0\n+36\t0.8\t0.0\t0.0\t0.0\n+37\t0.88\t0.0\t0.0\t0.0\n+38\t1.0\t0.0\t0.0\t0.0\n+39\t1.12\t0.0\t0.0\t0.0\n+40\t1.22\t0.0\t0.0\t0.0\n+41\t1.38\t0.0\t0.0\t0.0\n+42\t1.48\t0.0\t0.0\t0.0\n >>END_MODULE\n >>Kmer Content\tpass\n >>END_MODULE\n' |
| b |
| diff -r 28d39af2dd06 -r 3fdc1a74d866 test-data/fastqc_report.html --- a/test-data/fastqc_report.html Mon Jan 18 09:33:58 2016 -0500 +++ b/test-data/fastqc_report.html Mon Apr 11 10:27:34 2016 -0400 |
| [ |
| b'@@ -184,4 +184,4 @@\n padding-top: 0;\r\n margin-top: 0;\r\n }\r\n-</style></head><body><div class="header"><div id="header_title"><img src="data:image/png;base64,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" alt="FastQC"/>FastQC Report</div><div id="header_filename">Wed 4 Feb 2015<br/>1000gsample.fastq</div></div><div class="summary"><h2>Summary</h2><ul><li><img src="data:image/png;base64,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" alt="[PASS]"/><a href="#M0">Basic Statistics</a></li><li><img src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACAAAAAgCAYAAABzenr0AAAEpklEQVR42s1XfUyUdRz/URrktNpaW/aHW1LLNdN0+U9WSzdfcq31/uLrWvZP+Y/2T+mc54GplSCOt4CBgqicpICGwokvSYkc3B3nQJxmBSo0K6fsiJe759Pn+zzccRx3xyGwvO07fvye5/f9fH7f90cBUP+nDP+QSd1XZ1LT6hPU/FqzWi4ia9mTZ2NGwLZZvUag/Dqzul2XoDzOROVu3KI6RGQte/JM3pF3R41AbaJ6pT5RNdgT1L+tyXGezpJFgM0MNGYDV34A'..b'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" alt="Adapter graph" width="800" height="600"/></p></div><div class="module"><h2 id="M11"><img src="data:image/png;base64,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" alt="[OK]"/>Kmer Content</h2><p>No overrepresented Kmers</p></div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.11.4)</div></body></html>\n\\ No newline at end of file\n' |
| b |
| diff -r 28d39af2dd06 -r 3fdc1a74d866 test-data/fastqc_report2.html --- a/test-data/fastqc_report2.html Mon Jan 18 09:33:58 2016 -0500 +++ b/test-data/fastqc_report2.html Mon Apr 11 10:27:34 2016 -0400 |
| [ |
| b'@@ -184,4 +184,4 @@\n padding-top: 0;\r\n margin-top: 0;\r\n }\r\n-</style></head><body><div class="header"><div id="header_title"><img src="data:image/png;base64,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" alt="FastQC"/>FastQC Report</div><div id="header_filename">Wed 4 Feb 2015<br/>1000gsample.fastq</div></div><div class="summary"><h2>Summary</h2><ul><li><img src="data:image/png;base64,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" alt="[PASS]"/><a href="#M0">Basic Statistics</a></li><li><img src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACAAAAAgCAYAAABzenr0AAAEpklEQVR42s1XfUyUdRz/URrktNpaW/aHW1LLNdN0+U9WSzdfcq31/uLrWvZP+Y/2T+mc54GplSCOt4CBgqicpICGwokvSYkc3B3nQJxmBSo0K6fsiJe759Pn+zzccRx3xyGwvO07fvye5/f9fH7f90cBUP+nDP+QSd1XZ1LT6hPU/FqzWi4ia9mTZ2NGwLZZvUag/Dqzul2XoDzOROVu3KI6RGQte/JM3pF3R41AbaJ6pT5RNdgT1L+tyXGezpJFgM0MNGYDV34A'..b'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" alt="Adapter graph" width="800" height="600"/></p></div><div class="module"><h2 id="M11"><img src="data:image/png;base64,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" alt="[OK]"/>Kmer Content</h2><p>No overrepresented Kmers</p></div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.11.4)</div></body></html>\n\\ No newline at end of file\n' |
| b |
| diff -r 28d39af2dd06 -r 3fdc1a74d866 tool_dependencies.xml --- a/tool_dependencies.xml Mon Jan 18 09:33:58 2016 -0500 +++ b/tool_dependencies.xml Mon Apr 11 10:27:34 2016 -0400 |
| b |
| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="FastQC" version="0.11.4"> - <repository changeset_revision="a7f81f2554ad" name="package_fastqc_0_11_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="a8f485b2efd9" name="package_fastqc_0_11_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |