| Previous changeset 11:52c5e53aff28 (2013-01-02) Next changeset 13:346a2b0979ea (2013-01-17) |
|
Commit message:
Fixed issue where adapter removal can not be performed and further minor issues. |
|
modified:
flexbar.pl flexbar.xml |
| b |
| diff -r 52c5e53aff28 -r 4cbf6c6d2f2b flexbar.pl --- a/flexbar.pl Wed Jan 02 12:54:28 2013 +0100 +++ b/flexbar.pl Thu Jan 17 18:09:44 2013 +0100 |
| b |
| @@ -18,7 +18,7 @@ my $fileType; $fileType = $1 if /\.(\w+)$/; - $fileType = $format if /\.\w+fast\w$/; + $fileType = $format if /\.\w*fast\w$/; $fileType = 'tabular' if $fileType eq 'lengthdist'; my $file = $_; |
| b |
| diff -r 52c5e53aff28 -r 4cbf6c6d2f2b flexbar.xml --- a/flexbar.xml Wed Jan 02 12:54:28 2013 +0100 +++ b/flexbar.xml Thu Jan 17 18:09:44 2013 +0100 |
| b |
| @@ -94,11 +94,10 @@ --barcode-mismatch $bMismatch --barcode-gap $bGap #end if - #end if - #if $cAdapters.select == "yes": + #if $cAdapters.select == "on": #if $cAdapters.ccAdapters.select == "data": --adapters $cAdapters.ccAdapters.adaptersData @@ -117,22 +116,21 @@ --adapter-min-overlap $cAdapters.aMinOverlap --adapter-threshold $cAdapters.aThresh - #if $cAdapters.caAlignScores.select == "on": + #if $cAdapters.caAlignScores.select == "yes": --adapter-match $aMatch --adapter-mismatch $aMismatch --adapter-gap $aGap #end if - #end if - #if $cLogging.select == "show" + #if $cLogging.select == "show": $cLogging.logLevel $cLogging.noLenDist $cLogging.remTag #end if - #if $cLogging.select == "off" + #if $cLogging.select == "off": --no-length-dist #end if |