| Previous changeset 4:d9c2b2fde6a3 (2022-09-15) Next changeset 6:83e828f8ba26 (2023-11-01) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clustalw commit f7923954e747d05d1e70d653ef1b544c3e14622f |
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added:
test-data/rgClustal_testout02.fasta test-data/rgClustal_testout03.fasta |
| b |
| diff -r d9c2b2fde6a3 -r 4daabc25df00 test-data/rgClustal_testout02.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rgClustal_testout02.fasta Sun Oct 02 15:32:37 2022 +0000 |
| b |
| @@ -0,0 +1,44 @@ +CLUSTAL 2.1 multiple sequence alignment + + +c_briggsae-chrIfooI_+_/43862-4 CG-CACAAAT----ATG--ATGCACA-AATCCACAA------------CC +c_brenneri-Cbre_Contig60gak_+_ CG-CACAAAT----GTA--GTGGACA-AATCCGCAT------------CC +c_remanei-Crem_Contig172foo_-_ -AGCACAAAT----GTA--ATGAACG-AATCCGCAT------------CC +c_elegans-II_+_more/9706834-97 TG-CACAAAT----GTG--ATGAACG-AATCCACAT------------CC +c_briggsae-chrII_+_bar/43862-4 ---C-CGGA-----GT----CG------ATCC-----------------C +c_briggsae-chrII_+_/43862-4631 ----ATGAGCTTCCACA--AAA-GCATGAGCT-T-T------------CT +c_brenneri-Cbre_Contig60_+_/62 ----ATGAGCCTCCACA--ACA-GCATGATTT-T-T------------CT +c_remanei-Crem_Contig172_-_/12 ----ATGAGCCTCTACAAC-CG--CATGATTC-T-T------------TT +c_elegans-II_+_/9706834-970880 ----ATGAGCCTCTAC--TACA-GCATGATTC-T-T------------CT +c_remanei-Crem_Contig172zot_-_ ----ACGAA-----GT----CG-GT----CCC-TATAAGG---------T +c_elegans-II_+_meh/9706834-970 ----ACGAA-----GT----CG-GT----CCC-T---GAA---------C +c_brenneri-Cbre_Contig60fee_+_ ----ACGAA-----GT----CG-AT----CCC-TG--AAA---------T + + +c_briggsae-chrIfooI_+_/43862-4 -TAAAGCATCTC----CGAT---AACGTTGAC---CGAA-G-T------- +c_brenneri-Cbre_Contig60gak_+_ -CAAAGCGTCTC----CGAT---AACATTTAC---CGAA-G-T------- +c_remanei-Crem_Contig172foo_-_ -CAACGCATCGC----CAAT---CACATTCAC----AGATG-T------- +c_elegans-II_+_more/9706834-97 -CAATGCATCAC----CGAT---CACATTGAC----AGATG-T------- +c_briggsae-chrII_+_bar/43862-4 -TGA-AT------------------------------------------- +c_briggsae-chrII_+_/43862-4631 -CAG--C-TT-C----TG-C---CACATCAGCATTCAAATGATC------ +c_brenneri-Cbre_Contig60_+_/62 -CGG--C-TT-C----CG-C---CACATCCGCATTCAAATGATC------ +c_remanei-Crem_Contig172_-_/12 -CAG--C-CT-C----TG-C---CACGTCCGCATTCAAATG-CTC----- +c_elegans-II_+_/9706834-970880 -CAG--C-TT-C----TG-C---AACGTCAGCATTCAGATGATC------ +c_remanei-Crem_Contig172zot_-_ ATGAT-T-TTATA---TGA----TGTACC-ATAAGGAAATAGT-C----- +c_elegans-II_+_meh/9706834-970 --AAT-TATT-T----TGA----TATA---G-AAAGAAACGGTA------ +c_brenneri-Cbre_Contig60fee_+_ -CAG------ATGAG-CGGT---TG-ACC-A---GAGAACAAC-C----- + + +c_briggsae-chrIfooI_+_/43862-4 --------- +c_brenneri-Cbre_Contig60gak_+_ --------- +c_remanei-Crem_Contig172foo_-_ --------- +c_elegans-II_+_more/9706834-97 --------- +c_briggsae-chrII_+_bar/43862-4 --------- +c_briggsae-chrII_+_/43862-4631 --------- +c_brenneri-Cbre_Contig60_+_/62 --------- +c_remanei-Crem_Contig172_-_/12 --------- +c_elegans-II_+_/9706834-970880 --------- +c_remanei-Crem_Contig172zot_-_ --------- +c_elegans-II_+_meh/9706834-970 --------- +c_brenneri-Cbre_Contig60fee_+_ --------- + |
| b |
| diff -r d9c2b2fde6a3 -r 4daabc25df00 test-data/rgClustal_testout03.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rgClustal_testout03.fasta Sun Oct 02 15:32:37 2022 +0000 |
| b |
| b'@@ -0,0 +1,458 @@\n+CLUSTAL 2.1 multiple sequence alignment\n+\n+\n+14== ------------------------------------MESGNV-SSSLFGNVSTA-LRPEA\n+15== ------------------------------------MEYHNV-SSVL-GNVSSV-LRPDA\n+16== ------------------------------------ME-------PL-CNASEPPLRPEA\n+17== ------------------------------------MD-------AL-CNASEPPLRPEA\n+18== -----------------------------------------------MTNATG----PQM\n+19== -----------------------------------------------MANVTG----PQM\n+20== ------------------------------------ME-SFA----VAAAQLG----PH-\n+21== ------------------------------------ME-SFA----VAAAQLG----PH-\n+22== ------------------------------------MD-SFA----AVATQLG----PQ-\n+23== ------------------------------------MERSHLPETPFDLAHSG----PR-\n+24== ------------------------------------MERSLLPEPPLAMALLG----PR-\n+25== -----------------------------------------------MIAVSG----PS-\n+26== ------------------------------------------MANQLSYSSLGW---P--\n+27== ------------------------------------------------------------\n+28== ------------------------------------------------------------\n+1== -----------------------------------------------------MNGT-E-\n+2== -----------------------------------------------------MNGT-E-\n+4=p -----------------------------------------------------MNGT-E-\n+5=p -----------------------------------------------------MNGT-E-\n+3== -----------------------------------------------------MNGT-E-\n+6== -----------------------------------------------------MKQVPEF\n+7== -----------------------------------------------------MRKMSE-\n+9== -----------------------------------------MAQQWSLQRLAGRHPQDSY\n+10== -----------------------------------------MAQQWSLQRLAGRHPQDSY\n+8=opsin_ ------------------------------------------------------------\n+11== -----------------------------------------MTEAWNVAVFAARRSRDD-\n+12== -----------------------------------------MA-AWEAA-FAARRRHEE-\n+13== ------------------------------------------------------------\n+30== ------------------------------------------------------------\n+31=p ------------------------------------------------------------\n+29== ---------------------MMDVNSSGRPDLYGHLRSFLLPEVGRGLPDLSPDGGADP\n+32== -----------------------------------------------MDVL-SPGQ-GNN\n+33=p -----------------------------------------------MDVF-SFGQ-GNN\n+34== MANFTFGDLALDVARM-GGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFING\n+35=p MANFTFGDLALDVARM-GGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFING\n+36== ---------------MEGAEGQEELDWEALYLRLP-LQ---------NCSWNSTGWEPNW\n+ \n+\n+14== RLSA---ETRLLGWN------VPPEELRH-IPEHWLTYPE-PPES--MNYLLGT---LYI\n+15== RLSA---ESRLLGWN------VPPDELRH-IPEHWLIYPE-PPES--MNYLLGT---LYI\n+16== R-SSGNGDLQFLGWN------VPPDQIQY-IPEHWLTQLE-PPAS--MHYMLGV---FYI\n+17== RMSSGSDELQFLGWN------VPPDQIQY-IPEHWLTQLE-PPAS--MHYMLGV---FYI\n+18== AYYGAASMDFGYPEGVSIVDFVRPE-IKPYVHQHWYNY---PPVNPMWHYLLGV---IYL\n+19== AFYGSGAATFGYPEGMTVADFV-PDRVKHMVLDHWYNY---PPVNPMWHYLLGV---VYL\n+20== -F-A-PL------SNGSVVDKVTPD-MAHLISPYWNQF---PAMDPIWAKILTA---YMI\n+21== -F-A-PL------SNGSVVDKVTPD-MAHLISPYWNQF---PAMDPIWAKILTA---YMI\n+22== -F-AAP-------SNGSVVDKVTPD-MAHLISPYWDQF---PAMDPIWAKILTA---YMI\n+23== -FQAQSS------GNGSVLDNVLPD-MAHLVNPYWSRFA--P-MDPMMSKILGL---FTL\n+24== -FEAQTG------GNRSVLDNVLPD-MAPLVNPHWSRFA--P-MDPTMSKILGL---FTL\n+25== -YEAFSYGGQARFNNQTVVDKVPPD-MLHLIDANWYQY---PPLNPMWHGILG----FVI\n+26== -Y--QP--------NASVVDTMPKE-MLYMIHEHWYAF---PPMNPLWYSILGV---AMI\n+27== -----MVESTTLV-NQT'..b'GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPP\n+28== SSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQG-YPP-QGYPP\n+1== T-SPVSPA----------------------------------------------------\n+2== T-SQVAPA----------------------------------------------------\n+4=p ------PA----------------------------------------------------\n+5=p ------PA----------------------------------------------------\n+3== S-SQVSPA----------------------------------------------------\n+6== ------PEK---------------------------------------------------\n+7== S-TQVGPN----------------------------------------------------\n+9== ---SVSPA----------------------------------------------------\n+10== ---SVSPA----------------------------------------------------\n+8=opsin_ ------------------------------------------------------------\n+11== N-SSVAPA----------------------------------------------------\n+12== N-SSVSPA----------------------------------------------------\n+13== LRNKVMPAHPV-------------------------------------------------\n+30== ERSEFVLQNSDHCGKKGHDT----------------------------------------\n+31=p ERSEFVLQNSDHCGKKGHDT----------------------------------------\n+29== ERPEFVLQNADYCRKKGHDS----------------------------------------\n+32== ------------------------------------------------------------\n+33=p ------------------------------------------------------------\n+34== ------------------------------------------------------------\n+35=p ------------------------------------------------------------\n+36== ------------------------------------------------------------\n+ \n+\n+14== ----------------------------------------\n+15== ----------------------------------------\n+16== ----------------------------------------\n+17== ----------------------------------------\n+18== ----------------------------------------\n+19== ----------------------------------------\n+20== ----------------------------------------\n+21== ----------------------------------------\n+22== ----------------------------------------\n+23== ----------------------------------------\n+24== ----------------------------------------\n+25== ----------------------------------------\n+26== ----------------------------------------\n+27== QGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA\n+28== QGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA\n+1== ----------------------------------------\n+2== ----------------------------------------\n+4=p ----------------------------------------\n+5=p ----------------------------------------\n+3== ----------------------------------------\n+6== ----------------------------------------\n+7== ----------------------------------------\n+9== ----------------------------------------\n+10== ----------------------------------------\n+8=opsin_ ----------------------------------------\n+11== ----------------------------------------\n+12== ----------------------------------------\n+13== ----------------------------------------\n+30== ----------------------------------------\n+31=p ----------------------------------------\n+29== ----------------------------------------\n+32== ----------------------------------------\n+33=p ----------------------------------------\n+34== ----------------------------------------\n+35=p ----------------------------------------\n+36== ----------------------------------------\n+ \n' |