| Previous changeset 41:76a16146f5f1 (2014-06-16) Next changeset 43:95d6a7a59632 (2014-06-16) |
|
Commit message:
Uploaded |
|
added:
GetIg.R |
| b |
| diff -r 76a16146f5f1 -r 66fc1abbdf07 GetIg.R --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GetIg.R Mon Jun 16 16:24:23 2014 -0400 |
| [ |
| @@ -0,0 +1,23 @@ +sink(file="/tmp/none") +sink("/dev/null") +options(warn=-1) +options(echo=F) + +invisible("EBSeq") +suppressMessages(library("EBSeq")) + +args <- commandArgs(trailingOnly = T) +inputfile <- args[1] +outputfile <- args[2] + +print(args) + +a1=read.csv(inputfile,stringsAsFactors=F,header=F, sep="\t") +Ng=GetNg(a1[[1]],a1[[2]]) +Ig=Ng$IsoformNgTrun + + + + +write.table(Ig,file=outputfile,quote=F,col.names=F,row.names=F,sep = "\t") + |