| Previous changeset 6:df3b28364cd2 (2015-12-09) Next changeset 8:411adeff1eec (2016-08-23) |
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Commit message:
allele-counts.xml: Fix bug causing crash when no seed is given. |
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modified:
allele-counts.xml |
| b |
| diff -r df3b28364cd2 -r a72277535a2c allele-counts.xml --- a/allele-counts.xml Wed Dec 09 11:20:51 2015 -0500 +++ b/allele-counts.xml Wed Dec 09 11:37:02 2015 -0500 |
| b |
| @@ -1,6 +1,10 @@ <tool id="allele_counts_1" version="1.2" name="Variant Annotator"> <description> process variant counts</description> - <command interpreter="python">allele-counts.py -i $input -o $output -f $freq -c $covg $header $stranded $nofilt -r $seed</command> + <command interpreter="python">allele-counts.py -i $input -o $output -f $freq -c $covg $header $stranded $nofilt + #if $seed: + -r $seed + #end if + </command> <inputs> <param name="input" type="data" format="vcf" label="Input variants from Naive Variants Detector"/> <param name="freq" type="float" value="1.0" min="0" max="100" label="Minor allele frequency threshold" help="in percent"/> |