| Previous changeset 1:250151b4d934 (2014-03-27) Next changeset 3:c1419fa820c6 (2015-03-18) |
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modified:
bam_to_sam.xml tool_dependencies.xml |
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| diff -r 250151b4d934 -r c09a20532957 bam_to_sam.xml --- a/bam_to_sam.xml Thu Mar 27 15:10:14 2014 -0400 +++ b/bam_to_sam.xml Thu Mar 05 21:22:11 2015 -0500 |
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| @@ -56,11 +56,8 @@ .. _SAMTools: http://samtools.sourceforge.net/samtools.shtml ------- - -**Citation** - -For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_ - </help> + <citations> + <citation type="doi">10.1093/bioinformatics/btp352</citation> + </citations> </tool> |
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| diff -r 250151b4d934 -r c09a20532957 tool_dependencies.xml --- a/tool_dependencies.xml Thu Mar 27 15:10:14 2014 -0400 +++ b/tool_dependencies.xml Thu Mar 05 21:22:11 2015 -0500 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="samtools" version="0.1.19"> - <repository changeset_revision="1ef76f8d8e52" name="package_samtools_0_1_19" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |