| Previous changeset 16:ff9530579d1f (2018-01-14) Next changeset 18:3e1cdf5406db (2018-11-05) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit e06f74f574276b793bf9c1c788de8d97db449af2 |
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modified:
rgFastQC.xml |
| b |
| diff -r ff9530579d1f -r c15237684a01 rgFastQC.xml --- a/rgFastQC.xml Sun Jan 14 09:31:51 2018 -0500 +++ b/rgFastQC.xml Fri Jun 01 15:49:50 2018 -0400 |
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| @@ -1,12 +1,12 @@ -<tool id="fastqc" name="FastQC" version="0.71"> +<tool id="fastqc" name="FastQC" version="0.72"> <description>Read Quality reports</description> <requirements> - <requirement type="package" version="0.11.6">fastqc</requirement> + <requirement type="package" version="0.11.7">fastqc</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ #import re #set input_name = re.sub('[^\w\-\s]', '_', str($input_file.element_identifier)) - + #if $input_file.ext.endswith('.gz'): #set input_file_sl = $input_name + '.gz' #elif $input_file.ext.endswith('.bz2'): @@ -27,15 +27,15 @@ mkdir -p '${html_file.files_path}' && fastqc --outdir '${html_file.files_path}' - + #if $contaminants.dataset and str($contaminants) > '' --contaminants '${contaminants}' #end if - + #if $limits.dataset and str($limits) > '' --limits '${limits}' #end if - + --quiet --extract -f '${format}' |