Repository 'sam_to_bam'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam

Changeset 10:cf1ffd88f895 (2019-10-17)
Previous changeset 9:b77f7b516b17 (2019-07-29) Next changeset 11:1e69848b596f (2021-09-28)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 851f81495c875ac09d936537ffd2b32e6af2c8c5"
modified:
sam_to_bam.xml
b
diff -r b77f7b516b17 -r cf1ffd88f895 sam_to_bam.xml
--- a/sam_to_bam.xml Mon Jul 29 08:47:05 2019 -0400
+++ b/sam_to_bam.xml Thu Oct 17 02:17:48 2019 -0400
b
@@ -26,7 +26,7 @@
             -O bam
             -@ \${GALAXY_SLOTS:-1}
             -o '$output1'
-            -T temp
+            -T "\${TMPDIR:-.}"
     ]]></command>
 
     <inputs>
@@ -42,7 +42,7 @@
                 </param>
                 <param name="index" type="select" label="Using reference genome">
                     <options from_data_table="fasta_indexes">
-                        <filter column="1" key="dbkey" ref="input1" type="data_meta" />
+                        <filter column="dbkey" key="dbkey" ref="input1" type="data_meta" />
                         <validator message="No reference genome is available for the build associated with the selected input dataset" type="no_options" />
                     </options>
                 </param>