| Next changeset 1:aebe98ba5c22 (2013-03-15) |
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Commit message:
Uploaded |
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added:
GetNormalizedExpression.xml |
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| diff -r 000000000000 -r e42c12a40df6 GetNormalizedExpression.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GetNormalizedExpression.xml Fri Mar 15 18:18:16 2013 -0400 |
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| @@ -0,0 +1,25 @@ +<tool id="Get_Normalized_Expressions" name="Get Normalized Expressions"> + <description>Calculate normalization factors and get the normalized expression matrix</description> + <command>R --quiet --slave --file=$GALAXY_ROOT_DIR/tools/EBSeq/GetNormalizedExpression.R --args $Gene_Expression $First_Row_Sample_Names $output $Boxplots $Sizes </command> + <inputs> + <param name="Gene_Expression" type="data" format="tabular" label="Gene Expression (tab eliminated)"/> + <param name="First_Row_Sample_Names" type="select" format="text"> + <label>The First Row is Sample Names?</label> + <option value="y">Yes</option> + <option value="n">No</option> + </param> + </inputs> + <outputs> + <data format="tabular" name="output" /> + <data format="pdf" name="Boxplots" /> + <data format="tabular" name="Sizes" /> + </outputs> + + <help> +The function would provide the normalized expression values (normalized by the library size factors) and estimated library size factors. +A boxplot for checking will also be generated. + +</help> + + +</tool> |