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Changeset 14:f2e8552cf1d0 (2017-10-23)

Previous changeset 13:9337dd1fbc66 (2017-06-05) Next changeset 15:2b0c9d9fc6ca (2017-11-24)

Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 4a3c9f195ba5d899b1a1ce5e80281cdf230f456a

modified:
rgFastQC.py

diff -r 9337dd1fbc66 -r f2e8552cf1d0 rgFastQC.py
--- a/rgFastQC.py Mon Jun 05 13:49:57 2017 -0400
+++ b/rgFastQC.py Mon Oct 23 13:26:32 2017 -0400

[

@@ -58,7 +58,7 @@
             try:
                 f.readline()
                 ftype = ['gzip']
-            except:
+            except Exception:
                 trimext = True
             f.close()
         elif linf.endswith('bz2') or informat.endswith('.bz2'):
@@ -66,7 +66,7 @@
             try:
                 ftype = ['bzip2']
                 f.readline()
-            except:
+            except Exception:
                 trimext = True
             f.close()
         elif linf.endswith('.zip'):
@@ -76,7 +76,7 @@
             f = open(self.opts.input)
             try:
                 f.readline()
-            except:
+            except Exception:
                 raise Exception("Input file corruption, could not identify the filetype")
             infname = os.path.splitext(infname)[0]