| Previous changeset 12:0839f84def5e (2021-06-20) Next changeset 14:e42225f8a659 (2021-07-08) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ea679515491b0e9e13ec0084b59a40457eb355cc" |
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modified:
macros.xml maxquant.xml test-data/03/config.yml test-data/05/config.yml test-data/05/mqpar.xml |
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| diff -r 0839f84def5e -r 181bd6a5f6ce macros.xml --- a/macros.xml Sun Jun 20 16:37:41 2021 +0000 +++ b/macros.xml Fri Jun 25 07:18:03 2021 +0000 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0" ?> <macros> <token name="@VERSION@">1.6.17.0</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@VERSION_PTXQC@">1.0.10</token> <token name="@SUBSTITUTION_RX@">[^\w\-\s\.]</token> <token name="@TMT2PLEX@"> |
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| diff -r 0839f84def5e -r 181bd6a5f6ce maxquant.xml --- a/maxquant.xml Sun Jun 20 16:37:41 2021 +0000 +++ b/maxquant.xml Fri Jun 25 07:18:03 2021 +0000 |
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| @@ -493,7 +493,7 @@ <param name="lfqNormType" type="select" label="Normalization type" multiple="false" help=""> <option value="0">None</option> - <option value="1">Classic</option> + <option value="1" selected="true">Classic</option> </param> </when> <when value="reporter_ion_ms2"> |
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| diff -r 0839f84def5e -r 181bd6a5f6ce test-data/03/config.yml --- a/test-data/03/config.yml Sun Jun 20 16:37:41 2021 +0000 +++ b/test-data/03/config.yml Fri Jun 25 07:18:03 2021 +0000 |
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| @@ -33,7 +33,7 @@ enzymes: [Trypsin/P] enzymeMode: 0 lfqMode: 1 - lfqNormType: 0 + lfqNormType: 1 lfqMinEdgesPerNode: 3 lfqAvEdgesPerNode: 6 lfqMinRatioCount: 2 |
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| diff -r 0839f84def5e -r 181bd6a5f6ce test-data/05/config.yml --- a/test-data/05/config.yml Sun Jun 20 16:37:41 2021 +0000 +++ b/test-data/05/config.yml Fri Jun 25 07:18:03 2021 +0000 |
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| @@ -38,7 +38,7 @@ enzymes: [Trypsin/P] enzymeMode: 0 lfqMode: 1 - lfqNormType: 0 + lfqNormType: 1 lfqMinEdgesPerNode: 3 lfqAvEdgesPerNode: 6 lfqMinRatioCount: 2 |
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| diff -r 0839f84def5e -r 181bd6a5f6ce test-data/05/mqpar.xml --- a/test-data/05/mqpar.xml Sun Jun 20 16:37:41 2021 +0000 +++ b/test-data/05/mqpar.xml Fri Jun 25 07:18:03 2021 +0000 |
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| @@ -298,7 +298,7 @@ <centroidPosition>0</centroidPosition> <diaQuantMethod>7</diaQuantMethod> <diaFeatureQuantMethod>2</diaFeatureQuantMethod> - <lfqNormType>0</lfqNormType> + <lfqNormType>1</lfqNormType> <diaTopNForQuant>10</diaTopNForQuant> <diaMinMsmsIntensityForQuant>0</diaMinMsmsIntensityForQuant> <diaTopMsmsIntensityQuantileForQuant>0.85</diaTopMsmsIntensityQuantileForQuant> |