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ucsb_phylogenetics/galaxy_hamster/hamster.loc.sample |
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| diff -r b3e6613299e4 -r c83d7e34cc88 ucsb_phylogenetics/galaxy_hamster/hamster.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ucsb_phylogenetics/galaxy_hamster/hamster.loc.sample Sun Aug 26 19:50:30 2012 -0400 |
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| @@ -0,0 +1,14 @@ +#This is a the file indicating the location of local core orthologs for use in hamster +#Hamster requires numerous input files in order to use core orthologs +# +#4 columns are needed: +# +#core_ortholog_dir display_name core_ortholog_path ref_genome_blast_path ref_genome +arthNreg Arthropods, Ref:Drosophila /home/galaxy/data/hamster/core_orthologs/arthNreg /home/galaxy/data/hamster/blast_dbs/drome_4 drome_4 +arthNreg2 Arthropods Updated 6-12, Ref:Drosophila /home/galaxy/data/hamster/core_orthologs/arthNreg2 /home/galaxy/data/hamster/blast_dbs/drome_4 drome_4 +modelorganisms Model Organisms, Ref:Drosophila /home/galaxy/data/hamster/core_orthologs/modelorganisms /home/galaxy/data/hamster/blast_dbs/DROME DROME +lophotro Lophotrochozoa, Ref:Lottia /home/galaxy/data/hamster/core_orthologs/lophotro /home/galaxy/data/hamster/blast_dbs/lotgi_2713 lotgi_2713 +lophotroOMA OMA-Lophotrochozoa, Ref:Lottia /home/galaxy/data/hamster/core_orthologs/Lophotro_oma /home/galaxy/data/hamster/blast_dbs/lotgi_oma lotgi_oma + + +#A number of files must be in the right place with the right names for this to work |