| Previous changeset 8:28e422c589ac (2012-09-12) Next changeset 10:07d55d9ea9a4 (2013-12-16) |
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Commit message:
Add an optional alternative make route for compiling FreeBayes; solves issues seen installing under certain architectures. |
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modified:
tool_dependencies.xml |
| b |
| diff -r 28e422c589ac -r d291dc763c4c tool_dependencies.xml --- a/tool_dependencies.xml Wed Sep 12 13:06:51 2012 -0400 +++ b/tool_dependencies.xml Wed Jun 05 15:00:03 2013 -0400 |
| b |
| @@ -6,7 +6,7 @@ <action type="shell_command">git clone --recursive git://github.com/ekg/freebayes.git</action> <action type="shell_command">git checkout 9608597d12e127c847ae03aa03440ab63992fedf</action> <action type="shell_command">git submodule update --recursive</action> - <action type="shell_command">make</action> + <action type="shell_command">make || ( make clean && sed -i.bak -e 's:LIBS = -lz -lm -L./ -L../vcflib/tabixpp/ -L$(BAMTOOLS_ROOT)/lib -ltabix:LIBS = -lm -L./ -L../vcflib/tabixpp/ -L$(BAMTOOLS_ROOT)/lib -ltabix -lz:g' src/Makefile && make )</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> |