Galaxy |

Repository blast2go

Name: blast2go

Owner: peterjc

Synopsis: Maps BLAST results to GO annotation terms

Detailed description:

Galaxy wrapper for Java command line tool Blast2GO for pipelines, b2g4pipe v2.5,
available from http://blast2go.org/

The tool takes a single BLAST XML file as input, searched against a protein database
such as the NCBI non redundant database (NR). The tool gives a single tabular output
file, the annotation file which can be opened with the Blast2GO GUI.

The wrapper uses a Galaxy loc file to allow the use of one or more Blast2GO property
files (e.g. different versions of the database, or different servers, or different
evidence weighting settings). We use this to offer both a local Blast2GO database
(fast) and the public database hosted in Valencia, Spain.

Content homepage: https://github.com/peterjc/galaxy_blast/tree/master/tools/blast2go

Development repository: https://github.com/peterjc/galaxy_blast/tree/master/tools/blast2go

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/peterjc/blast2go/0ac3ef59ea93

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/blast2go

Type: unrestricted

Revision: 7:0ac3ef59ea93

This revision can be installed: True

Times cloned / installed: 3082

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
b2g4pipe	2.5	package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Blast2GO View tool metadata	Maps BLAST results to GO annotation terms	0.0.8	any

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Maps BLAST results to GO annotation terms

0.0.8

any