Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository scythe
Name: scythe
Owner: nikhil-joshi
Synopsis: A very simple adapter trimmer
Scythe uses a Naive Bayesian approach to classify contaminant
substrings in sequence reads. It considers quality information, which
can make it robust in picking out 3'-end adapters, which often include
poor quality bases.
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/nikhil-joshi/scythe/e01c19b11261
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nikhil-joshi/scythe
Type: unrestricted
Revision: 7:e01c19b11261
This revision can be installed: True
Times cloned / installed: 574

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Trimming adapters/contaminants using a Naive Bayesian classifier 1.0.0 any

Categories
Assembly - Tools for working with assemblies
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA