Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository samtools_mpileup
Name: samtools_mpileup
Owner: devteam
Synopsis: MPileup SNP and indel caller
Generate BCF or pileup for one or multiple BAM files. Alignment
records are grouped by sample identifiers in @RG header lines. If sample identifiers
are absent, each input file is regarded as one sample.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_mpileup
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_mpileup/973fea5b4bdf
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup
Type: unrestricted
Revision: 3:973fea5b4bdf
This revision can be installed: True
Times cloned / installed: 13402
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 0.1.19 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
SNP and indel caller 0.0.3 any

Categories
SAM - Tools for manipulating alignments in the SAM format