Repository maxquant

Name: maxquant

Owner: galaxyp

Synopsis: wrapper for MaxQuant

Detailed description:

MaxQuant is a quantitative proteomics software package
designed for analyzing large mass-spectrometric data sets.

It is specifically aimed at high-resolution MS data.
Several labeling techniques as well as label-free quantification are supported.

https://maxquant.org/

Content homepage: https://www.maxquant.org/

Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant

Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/maxquant/9c52362ae7bb

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant

Type: unrestricted

Revision: 22:9c52362ae7bb

This revision can be installed: True

Times cloned / installed: 1256

Repository README files - may contain important installation or license information

Readme files

GalaxyP - MaxQuant

Home: https://github.com/galaxyproteomics/tools-galaxyp/
Tool ID: maxquant
Tool Type: default

Description

Wrapper for the MaxQuant version available in conda.

Updating

MaxQuant often changes the layout of its parameters file. So changes to the code are likely to be necessary when updating to a new version of MaxQuant. The init.py script can be used to initialize the tool with a new list of modifications or enzymes. From the tool dir run:

./init.py -m MODIFICATIONS.XML -e ENZYMES.XML

The location of these xml files usually is: ANACONDA_DIR/bin/conf/