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Repository tophat2

Name: tophat2

Owner: devteam

Synopsis: Tophat - fast splice junction mapper for RNA-Seq reads

Detailed description:

TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read
aligner Bowtie(2), and then analyzes the mapping results to identify splice junctions
between exons.

Content homepage: http://ccb.jhu.edu/software/tophat/index.shtml

Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/tophat2/6242cda7e278

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/tophat2

Type: unrestricted

Revision: 4:6242cda7e278

This revision can be installed: True

Times cloned / installed: 8460

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
bowtie2	2.1.0	package
samtools	0.1.18	package
tophat2	2.0.9	package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Tophat View tool metadata	Gapped-read mapper for RNA-seq data	0.7	any

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Gapped-read mapper for RNA-seq data

0.7

any