| This tool converts BCF files into VCF files using BCFtools view from the SAMtools set of utilities.
For the underlying tool, please cite Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin RX 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15X25(16):2078-9. If you use this tool within Galaxy, please cite Gregory Minevich, Danny Park, Richard J. Poole, Daniel Blankenberg, Anton Nekrutenko, and Oliver Hobert. CloudMap: A Cloud-based Pipeline for Analysis of Mutant Genome Sequences. (2012 In Preparation) Correspondence to gm2123@columbia.edu (G.M.) or or38@columbia.edu (O.H.) |
hg clone https://toolshed.g2.bx.psu.edu/repos/gregory-minevich/bcftools_view
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Converts BCF format to VCF format | 0.0.1 | any | |