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Repository trinotate

Name: trinotate

Owner: iuc

Synopsis: Trinotate is a comprehensive annotation suite designed for automatic functional annotation of de novo transcriptomes.

Detailed description:

Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes,
particularly de novo assembled transcriptomes, from model or non-model organisms.

It will summarize, in a tabular report and SQLite database, different upstream outputs:
- Trinity: iuc/trinity https://toolshed.g2.bx.psu.edu/repository?repository_id=faf6028922d9220a
- TransDecoder: iuc/transdecoder https://toolshed.g2.bx.psu.edu/repository?repository_id=7a2a8151a50f8099
- Generate gene to transcript map for Trinity assembly: iuc/trinity_gene_to_trans_map https://toolshed.g2.bx.psu.edu/repository?repository_id=faf6028922d9220a
- NCBI BLAST+ blastp: devteam/ncbi_blast_plus https://toolshed.g2.bx.psu.edu/repository?repository_id=1d92ebdf7e8d466c
- NCBI BLAST+ blastx: devteam/ncbi_blast_plus https://toolshed.g2.bx.psu.edu/repository?repository_id=1d92ebdf7e8d466c
- HMMER hmmscan: iuc/hmmer_hmmscan https://toolshed.g2.bx.psu.edu/repository?repository_id=a2cc4683090b1800
- TMHMM 2.0: peterjc/tmhmm_and_signalp https://toolshed.g2.bx.psu.edu/repository?repository_id=292389a45f1a238a
- SignalP 3.0: peterjc/tmhmm_and_signalp https://toolshed.g2.bx.psu.edu/repository?repository_id=292389a45f1a238a

Content homepage: https://trinotate.github.io/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinotate

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/trinotate/2b093007fab9

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinotate

Type: unrestricted

Revision: 4:2b093007fab9

This revision can be installed: True

Times cloned / installed: 830