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Repository bwa

Name: bwa

Owner: devteam

Synopsis: Wrapper for bwa mem, aln, sampe, and samse

Detailed description:

A collection of Galaxy bwa wrappers based on version 0.7.17.

Content homepage: http://bio-bwa.sourceforge.net/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/bwa/ca29c55c78e7

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/bwa

Type: unrestricted

Revision: 8:ca29c55c78e7

This revision can be installed: True

Times cloned / installed: 22081

Dependencies of this repository

Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)

Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
bwa	0.7.10.039ea20639	package
samtools	1.2	package

Name

Version

Type

bwa

0.7.10.039ea20639

package

samtools

1.2

package

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Map with BWA-MEM View tool metadata	- map medium and long reads (> 100 bp) against reference genome	0.4.1	16.01
Map with BWA View tool metadata	- map short reads (< 100 bp) against reference genome	0.4.1	16.01