Galaxy |

Repository cuffcompare

Name: cuffcompare

Owner: devteam

Synopsis: Galaxy wrappers for the Cuffcompare tool.

Detailed description:

Cuffcompare is part of Cufflinks. Cuffcompare helps you: (a) compare
your assembled transcripts to a reference annotation and (b) track Cufflinks transcripts
across multiple experiments (e.g. across a time course).

Content homepage: http://cole-trapnell-lab.github.io/cufflinks/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/cuffcompare/9a3f7a890da6

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare

Type: unrestricted

Revision: 1:9a3f7a890da6

This revision can be installed: True

Times cloned / installed: 5814

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
cufflinks	2.1.1	package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Cuffcompare View tool metadata	compare assembled transcripts to a reference annotation and track Cufflinks transcripts across multiple experiments	0.0.5	any

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

compare assembled transcripts to a reference annotation and track Cufflinks transcripts across multiple experiments

0.0.5

any