X!Tandem

Requirements

This package uses protk and the trans_proteomic_pipeline which need to be present in order for the tool to work.

There are two ways you can satify these dependencies (choose one):

1. Manual Install: Details on how to install protk and the trans_proteomic_pipeline manually are available here.
2. Use Docker: These tools are designed to run inside a docker container. If your galaxy supports running tools within a docker container you don't need to worry about dependencies. Simply install and things should just work. The docker container itself is versioned and new versions of this tool will automatically download an update to the container if needed.

Further Info

The source code for this tool and other protk galaxy tools is on github. Please visit the github page to contribute to the project or to report an issue

Please visit the XTandem page on the GPM website for details of the search engine itself.