| Indicates on a SnpEff output file which genes are found in a candidate list by comparing Gene IDs.
The candidate list should be in a tabular format with two columns: Gene ID and Gene Description (e.g. C55B7.12 and transcription_factor). The file should contain no headers. This tool is part of the CloudMap pipeline for analysis of mutant genome sequences. For further details, please see Gregory Minevich, Danny Park, Richard J. Poole, Daniel Blankenberg, Anton Nekrutenko, and Oliver Hobert. CloudMap: A Cloud-based Pipeline for Analysis of Mutant Genome Sequences. (2012 In Preparation) Useful candidate lists (e.g. transcription factors, genes expressed in neurons, transgene silencers, chromatin factors) are available on the CloudMap Galaxy page: https://test.g2.bx.psu.edu/u/gal40/p/cloudmap |
hg clone https://toolshed.g2.bx.psu.edu/repos/gregory-minevich/check_snpeff_candidates
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Marks up a snpEff output file with matches to a gene candidate list. | 1.0.0 | any | |