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Repository downloader_bank_hmdb

Name: downloader_bank_hmdb

Owner: fgiacomoni

Synopsis: [W4M][Metabolomics][LC-MS] HMDB database downloader - Get Data/Annotation - Get a specific metabolite bank (as Urine...) from The Human Metabolome Database.

Detailed description:

Part of the W4M project: http://workflow4metabolomics.org / HMDB: http://www.hmdb.ca/. The wrapper script use the HMDB 'Download' resource to provide banks formatted to W4M annotation tools through metabocards.

Content homepage: http://workflow4metabolomics.org

Link to this repository: https://toolshed.g2.bx.psu.edu/view/fgiacomoni/downloader_bank_hmdb/be504ccbc41c

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/fgiacomoni/downloader_bank_hmdb

Type: unrestricted

Revision: 2:be504ccbc41c

This revision can be installed: True

Times cloned / installed: 131

Repository README files - may contain important installation or license information

Readme files

# HMDB bank downloader

# Version 1.1

Download a bank containing information (like : HMDB id, Name, mz, inchikey) from HMDB online web portal and convert it into W4M annotation tool input formats.

Several specific metabolite banks are available like Urine, Serum, cerebrospinal fluid, ...

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Wishart bank downloader View tool metadata	: get a specific metabolite bank (as Urine, Serum...) from Wishart web portal.	1.1.2	16.01