Repository 'digital_dge'
http://toolshed.g2.bx.psu.edu/view/fubar/digital_dge
digital_dge
unrestricted
Wrapper for RNA-seq DGE using the edgeR bioconductor package
Given a tabular file containing counts of reads overlapping exons or other contigs from two groups (eg treatment, control) of RNA-seq samples with biological replicates, this tool runs edgeR to estimate the probability of each contig being differentially expressed. The companion bams2mx tool is recommended for creating appropriate input files from RNA-seq data mapped to either a transcriptome or genome as BAM files.
3:dd69d0a22d92
fubar
False
210

Contents of this repository

Name Description Version
Digital differential expression for RNA counts 0.01

Categories
Statistics